RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 C6orf141Q5SZD1 244 aa12.15□□□□□ -0.46
VIPAS39-208ENST00000556412 KCTD18Q6PI47 426 aaPredicted RBP12.15□□□□□ -0.46
VIPAS39-208ENST00000556412 ZNF786Q8N393 782 aa12.15□□□□□ -0.46
VIPAS39-208ENST00000556412 OR52I1Q8NGK6 324 aa12.15□□□□□ -0.46
VIPAS39-208ENST00000556412 RNF133Q8WVZ7 376 aa12.15□□□□□ -0.46
VIPAS39-208ENST00000556412 ASB17Q8WXJ9 295 aa12.15□□□□□ -0.46
VIPAS39-208ENST00000556412 MNTQ99583 582 aa12.15□□□□□ -0.46
VIPAS39-208ENST00000556412 SLCO1C1Q9NYB5 712 aa12.15□□□□□ -0.46
VIPAS39-208ENST00000556412 MYRFQ9Y2G1 1151 aa12.15□□□□□ -0.46
VIPAS39-208ENST00000556412 SPEF1Q9Y4P9 236 aa12.15□□□□□ -0.46
VIPAS39-208ENST00000556412 PCDHGB5Q9Y5G0 923 aa12.15□□□□□ -0.46
VIPAS39-208ENST00000556412 CACNA1CQ13936 2221 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 SHISA9B4DS77 424 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 PHYHO14832 338 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 AHSA2Q719I0 299 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 SSX6Q7RTT6 188 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 ZNF283Q8N7M2 679 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 ZNF540Q8NDQ6 660 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 ABHD4Q8TB40 342 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 SNX33Q8WV41 574 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 AKAP1Q92667 903 aaKnown RBP eCLIP12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 C4orf45Q96LM5 186 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 MROQ9BYG7 248 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 BRD7Q9NPI1 651 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 DDX28Q9NUL7 540 aaKnown RBP12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 ATPIF1Q9UII2 106 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 EXOGQ9Y2C4 368 aaKnown RBP12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 PCDHGB1Q9Y5G3 927 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 USP9YO00507 2555 aaPredicted RBP12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 HCFC1P51610 2035 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 SPTBN1Q01082 2364 aaKnown RBP12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 PRR32B1ATL7 298 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 PTGES3LE9PB15 166 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 M0R135 149 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 SLC1A7O00341 560 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 GOSR1O95249 250 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 LCKP06239 509 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 SLC2A1P11166 492 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 OPRL1P41146 370 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 WNT5AP41221 380 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 TPTEP56180 551 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 GRB2P62993 217 aaKnown RBP12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 HGFACQ04756 655 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 ARL9Q6T311 187 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 ZNF101Q8IZC7 436 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 ACBD7Q8N6N7 88 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 GGHQ92820 318 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 ZNF799Q96GE5 643 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 KCNJ15Q99712 375 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 TMEM204Q9BSN7 226 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 UBTD1Q9HAC8 227 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 ELOVL3Q9HB03 270 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 SCN3BQ9NY72 215 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 LRP12Q9Y561 859 aa12.14□□□□□ -0.47
VIPAS39-208ENST00000556412 A0A1W2PPR1 153 aa12.13□□□□□ -0.47
VIPAS39-208ENST00000556412 IRGMA1A4Y4 181 aa12.13□□□□□ -0.47
VIPAS39-208ENST00000556412 EFCAB10A6NFE3 127 aa12.13□□□□□ -0.47
VIPAS39-208ENST00000556412 DENRO43583 198 aaKnown RBP12.13□□□□□ -0.47
VIPAS39-208ENST00000556412 KRT8P05787 483 aa12.13□□□□□ -0.47
VIPAS39-208ENST00000556412 SSTR2P30874 369 aa12.13□□□□□ -0.47
VIPAS39-208ENST00000556412 CX3CR1P49238 355 aa12.13□□□□□ -0.47
VIPAS39-208ENST00000556412 ZNF85Q03923 595 aa12.13□□□□□ -0.47
VIPAS39-208ENST00000556412 MED21Q13503 144 aa12.13□□□□□ -0.47
VIPAS39-208ENST00000556412 SPATA46Q5T0L3 261 aa12.13□□□□□ -0.47
VIPAS39-208ENST00000556412 PLEKHG7Q6ZR37 379 aa12.13□□□□□ -0.47
VIPAS39-208ENST00000556412 LHFPL3Q86UP9 236 aa12.13□□□□□ -0.47
VIPAS39-208ENST00000556412 NAA40Q86UY6 237 aa12.13□□□□□ -0.47
VIPAS39-208ENST00000556412 STX19Q8N4C7 294 aa12.13□□□□□ -0.47
VIPAS39-208ENST00000556412 C14orf79Q96F83 325 aa12.13□□□□□ -0.47
VIPAS39-208ENST00000556412 OR8B4Q96RC9 309 aa12.13□□□□□ -0.47
VIPAS39-208ENST00000556412 CISD1Q9NZ45 108 aaKnown RBP12.13□□□□□ -0.47
VIPAS39-208ENST00000556412 PSORS1C1Q9UIG5 152 aa12.13□□□□□ -0.47
VIPAS39-208ENST00000556412 J3QRE1 110 aa12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 GPRIN2O60269 458 aa12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 SMPD2O60906 423 aa12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 NGFP01138 241 aa12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 LCATP04180 440 aa12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 ANXA2P07355 339 aaKnown RBP12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 ACSM4P0C7M7 580 aa12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 NR4A1P22736 598 aa12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 RAD52P43351 418 aa12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 UCP2P55851 309 aa12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 ERVS71-1P61550 626 aa12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 ST3GAL4Q11206 333 aa12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 RSPO1Q2MKA7 263 aaPredicted RBP12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 ZNF672Q499Z4 452 aaPredicted RBP12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 TP53I3Q53FA7 332 aa12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 RFPL4BQ6ZWI9 263 aa12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 ZNF679Q8IYX0 411 aa12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 YIPF7Q8N8F6 280 aa12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 OR1J1Q8NGS3 322 aa12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 CA10Q9NS85 328 aa12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 MRPS18AQ9NVS2 196 aaKnown RBP12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 UBAP1Q9NZ09 502 aa12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 GNG8Q9UK08 70 aa12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 FZR1Q9UM11 496 aa12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 GTF2A1LQ9UNN4 478 aa12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 SPTAN1Q13813 2472 aaKnown RBP12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 ANKHD1Q8IWZ3 2542 aaKnown RBP12.12□□□□□ -0.47
VIPAS39-208ENST00000556412 FAM221AA4D161 298 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms