RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 STEAP2Q8NFT2 490 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 STT3BQ8TCJ2 826 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 CPED1A4D0V7 1026 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 LIPT2A6NK58 231 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 M0QYG6 137 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 P2RY10O00398 339 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 BET1O15155 118 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 FBXW4P57775 412 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 HSD17B13Q7Z5P4 300 aaPredicted RBP12.04□□□□□ -0.48
SHMT2-222ENST00000555774 LINC00346Q8IVM7 164 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 SLC38A6Q8IZM9 456 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 KDM8Q8N371 416 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 SLC22A24Q8N4F4 322 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 EIF4E3Q8N5X7 224 aaKnown RBP12.04□□□□□ -0.48
SHMT2-222ENST00000555774 GALNT11Q8NCW6 608 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 OR4D6Q8NGJ1 314 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 OR5M9Q8NGP3 310 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 ARL5BQ96KC2 179 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 C5orf34Q96MH7 638 aa12.04□□□□□ -0.48
SHMT2-222ENST00000555774 MRPS17Q9Y2R5 130 aaKnown RBP12.04□□□□□ -0.48
SHMT2-222ENST00000555774 TRAV14DV4A0A0A6YYC5 116 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 A8MXK9 166 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 SLC25A4P12235 298 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 FOSL2P15408 326 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 MGMTP16455 207 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 HLA-GP17693 338 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 TBPP20226 339 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 POU3F2P20265 443 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-222ENST00000555774 CD34P28906 385 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 CSNK1EP49674 416 aaKnown RBP12.03□□□□□ -0.48
SHMT2-222ENST00000555774 TAGLNQ01995 201 aaKnown RBP12.03□□□□□ -0.48
SHMT2-222ENST00000555774 FOXF1Q12946 379 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 ZNF345Q14585 488 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 MOGAT2Q3SYC2 334 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 ZNF660Q6AZW8 331 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-222ENST00000555774 LIN54Q6MZP7 749 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 ALKAL2Q6UX46 152 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 TMED4Q7Z7H5 227 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 PDZD9Q8IXQ8 264 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 SPERTQ8NA61 448 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 OR1M1Q8NGA1 313 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 OR13C8Q8NGS7 320 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 COQ8AQ8NI60 647 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 C11orf40Q8WZ69 217 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 SLAMF6Q96DU3 332 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 MRGPRX4Q96LA9 322 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 CXorf58Q96LI9 332 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 SLC25A32Q9H2D1 315 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 SLC22A11Q9NSA0 550 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 CENPMQ9NSP4 180 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 GPN3Q9UHW5 284 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-222ENST00000555774 RPH3AQ9Y2J0 694 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-222ENST00000555774 IGLV3-32A0A0A0MS00 114 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 TMEM235A6NFC5 223 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 RAB27BO00194 218 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 ALOX12BO75342 701 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 SCO1O75880 301 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 ERCC1P07992 297 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-222ENST00000555774 NUP62P37198 522 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-222ENST00000555774 DHRS2Q13268 280 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 SMAD4Q13485 552 aaKnown RBP12.03□□□□□ -0.48
SHMT2-222ENST00000555774 NR0B2Q15466 257 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 RNASE10Q5GAN6 216 aaKnown RBP12.03□□□□□ -0.48
SHMT2-222ENST00000555774 THEM4Q5T1C6 240 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 ZNF529Q6P280 563 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 FAHD2BQ6P2I3 314 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-222ENST00000555774 GLRX5Q86SX6 157 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 SLC25A42Q86VD7 318 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 FJX1Q86VR8 437 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 BEST3Q8N1M1 668 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 DTWD2Q8NBA8 298 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 OR5L2Q8NGL0 311 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 OR1J2Q8NGS2 313 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 FGGYQ96C11 551 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 FAHD2AQ96GK7 314 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 NKX3-1Q99801 234 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-222ENST00000555774 SLC6A7Q99884 636 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 PHF7Q9BWX1 381 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-222ENST00000555774 SLC7A5P2Q9GIP4 190 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 PBOV1Q9GZY1 135 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 ZNF576Q9H609 170 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 CNTD2Q9H8S5 307 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 CYB5R1Q9UHQ9 305 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 SLC5A6Q9Y289 635 aa12.03□□□□□ -0.48
SHMT2-222ENST00000555774 IGKV1D-43A0A0B4J1Z2 117 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 SYT7O43581 403 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 IL2RAP01589 272 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 TTRP02766 147 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 HEXBP07686 556 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 FGF2P09038 288 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 LAP3P28838 519 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 QRFPP83859 136 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 RHOUQ7L0Q8 258 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 TRAPPC6BQ86SZ2 158 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 ACBD4Q8NC06 268 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 OR5D14Q8NGL3 314 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 B3GNT4Q9C0J1 378 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 SDHAF3Q9NRP4 125 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 SERINC1Q9NRX5 453 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 MED29Q9NX70 200 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms