RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 COL6A5A8TX70 2615 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 CUBNO60494 3623 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 GASTP01350 101 aa13.63□□□□□ -0.23
CCDC88C-209ENST00000554872 GGT2P36268 569 aa13.63□□□□□ -0.23
CCDC88C-209ENST00000554872 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.63□□□□□ -0.23
CCDC88C-209ENST00000554872 FAM120AOSQ5T036 256 aa13.63□□□□□ -0.23
CCDC88C-209ENST00000554872 ZNF362Q5T0B9 420 aaPredicted RBP13.63□□□□□ -0.23
CCDC88C-209ENST00000554872 USP51Q70EK9 711 aa13.63□□□□□ -0.23
CCDC88C-209ENST00000554872 ADGRG5Q8IZF4 528 aa13.63□□□□□ -0.23
CCDC88C-209ENST00000554872 AQP11Q8NBQ7 271 aa13.63□□□□□ -0.23
CCDC88C-209ENST00000554872 SDR9C7Q8NEX9 313 aa13.63□□□□□ -0.23
CCDC88C-209ENST00000554872 OR52E2Q8NGJ4 325 aa13.63□□□□□ -0.23
CCDC88C-209ENST00000554872 OR5L1Q8NGL2 311 aa13.63□□□□□ -0.23
CCDC88C-209ENST00000554872 OR8D4Q8NGM9 314 aa13.63□□□□□ -0.23
CCDC88C-209ENST00000554872 OR2T4Q8NH00 348 aa13.63□□□□□ -0.23
CCDC88C-209ENST00000554872 BCAS4Q8TDM0 211 aa13.63□□□□□ -0.23
CCDC88C-209ENST00000554872 PTP4A1Q93096 173 aa13.63□□□□□ -0.23
CCDC88C-209ENST00000554872 APOBEC3DQ96AK3 386 aaPredicted RBP13.63□□□□□ -0.23
CCDC88C-209ENST00000554872 CCDC124Q96CT7 223 aaKnown RBP13.63□□□□□ -0.23
CCDC88C-209ENST00000554872 LRGUKQ96M69 825 aa13.63□□□□□ -0.23
CCDC88C-209ENST00000554872 PLA2G12AQ9BZM1 189 aa13.63□□□□□ -0.23
CCDC88C-209ENST00000554872 VNN3Q9NY84 501 aa13.63□□□□□ -0.23
CCDC88C-209ENST00000554872 TANC2Q9HCD6 1990 aa13.63□□□□□ -0.23
CCDC88C-209ENST00000554872 A0A1B0GWJ7 208 aa13.62□□□□□ -0.23
CCDC88C-209ENST00000554872 CLDN25C9JDP6 229 aa13.62□□□□□ -0.23
CCDC88C-209ENST00000554872 PPIHO43447 177 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-209ENST00000554872 TIMM8AO60220 97 aaPredicted RBP13.62□□□□□ -0.23
CCDC88C-209ENST00000554872 UBOX5O94941 541 aa13.62□□□□□ -0.23
CCDC88C-209ENST00000554872 LMO4P61968 165 aa13.62□□□□□ -0.23
CCDC88C-209ENST00000554872 SLC3A1Q07837 685 aa13.62□□□□□ -0.23
CCDC88C-209ENST00000554872 MEP1BQ16820 701 aa13.62□□□□□ -0.23
CCDC88C-209ENST00000554872 HFEQ30201 348 aa13.62□□□□□ -0.23
CCDC88C-209ENST00000554872 RBM4Q9BWF3 364 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-209ENST00000554872 POFUT1Q9H488 388 aa13.62□□□□□ -0.23
CCDC88C-209ENST00000554872 SRA1Q9HD15 236 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-209ENST00000554872 PNRC2Q9NPJ4 139 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-209ENST00000554872 MRPL22Q9NWU5 206 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-209ENST00000554872 STARD10Q9Y365 291 aa13.62□□□□□ -0.23
CCDC88C-209ENST00000554872 GRIP1Q9Y3R0 1128 aa13.62□□□□□ -0.23
CCDC88C-209ENST00000554872 GPANK1O95872 356 aa13.61□□□□□ -0.23
CCDC88C-209ENST00000554872 DBHP09172 617 aa13.61□□□□□ -0.23
CCDC88C-209ENST00000554872 SLC25A1P53007 311 aa13.61□□□□□ -0.23
CCDC88C-209ENST00000554872 TSTQ16762 297 aaKnown RBP13.61□□□□□ -0.23
CCDC88C-209ENST00000554872 PCK2Q16822 640 aa13.61□□□□□ -0.23
CCDC88C-209ENST00000554872 RSPO1Q2MKA7 263 aaPredicted RBP13.61□□□□□ -0.23
CCDC88C-209ENST00000554872 CLEC12AQ5QGZ9 265 aa13.61□□□□□ -0.23
CCDC88C-209ENST00000554872 CFAP77Q6ZQR2 320 aa13.61□□□□□ -0.23
CCDC88C-209ENST00000554872 OR2T33Q8NG76 320 aa13.61□□□□□ -0.23
CCDC88C-209ENST00000554872 SLC7A6Q92536 515 aa13.61□□□□□ -0.23
CCDC88C-209ENST00000554872 CLPTM1LQ96KA5 538 aa13.61□□□□□ -0.23
CCDC88C-209ENST00000554872 THTPAQ9BU02 230 aa13.61□□□□□ -0.23
CCDC88C-209ENST00000554872 CHID1Q9BWS9 393 aa13.61□□□□□ -0.23
CCDC88C-209ENST00000554872 C1QTNF5Q9BXJ0 243 aa13.61□□□□□ -0.23
CCDC88C-209ENST00000554872 NMNAT2Q9BZQ4 307 aa13.61□□□□□ -0.23
CCDC88C-209ENST00000554872 DDX28Q9NUL7 540 aaKnown RBP13.61□□□□□ -0.23
CCDC88C-209ENST00000554872 TBC1D23Q9NUY8 699 aa13.61□□□□□ -0.23
CCDC88C-209ENST00000554872 DHRS12A0PJE2 317 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 WNT9BO14905 357 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 TPD52L2O43399 206 aaKnown RBP13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 SPRY3O43610 288 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 CDC14BO60729 498 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 MSMBP08118 114 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 SRD5A1P18405 259 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 TNFSF4P23510 183 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 OTX1P32242 354 aaPredicted RBP13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 CENPAP49450 140 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 BLVRAP53004 296 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 CCNIQ14094 377 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 CR1LQ2VPA4 569 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 TEX30Q5JUR7 227 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 SLC35F1Q5T1Q4 408 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 OTPQ5XKR4 325 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 Q6ZR03 302 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 GLCCI1Q86VQ1 547 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 SLC37A3Q8NCC5 494 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 OR10G2Q8NGC3 310 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 RAB1CQ92928 201 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 SLC7A6OSQ96CW6 309 aaPredicted RBP13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 RAB39BQ96DA2 213 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 CMBLQ96DG6 245 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 TIMD4Q96H15 378 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 ATF6BQ99941 703 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 TSSK6Q9BXA6 273 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 MSL2Q9HCI7 577 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 IL19Q9UHD0 177 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 WIPI2Q9Y4P8 454 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 U3KQV3 271 aa13.6□□□□□ -0.23
CCDC88C-209ENST00000554872 DNHD1Q96M86 4753 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 IQCF6A8MYZ5 107 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 IFNL4K9M1U5 179 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 SURF4O15260 269 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 GYG2O15488 501 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 DEAF1O75398 565 aaPredicted RBP13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 CST1P01037 141 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 ACSM4P0C7M7 580 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 ANPEPP15144 967 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 TNFRSF1AP19438 455 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 TNFAIP6P98066 277 aaPredicted RBP13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 SLC27A4Q6P1M0 643 aa13.59□□□□□ -0.23
CCDC88C-209ENST00000554872 CORO6Q6QEF8 472 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms