RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 IGF2-ASQ6U949 168 aa23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 MDS2Q8NDY4 140 aa23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 ENKURQ8TC29 256 aa23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 HES7Q9BYE0 225 aa23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 ASCL3Q9NQ33 180 aa23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 NUFIP1Q9UHK0 495 aaKnown RBP23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 KLF13Q9Y2Y9 288 aaPredicted RBP23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 MED12Q93074 2177 aa23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 SPTBN2O15020 2390 aa23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 MEGF11A6BM72 1044 aa23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 CSRP1P21291 193 aaKnown RBP23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 ZNF84P51523 738 aa23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 RRADP55042 308 aa23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 CLDN15P56746 228 aa23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 DUSP18Q8NEJ0 188 aa23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 TTTY12Q9BZ98 90 aa23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 ULBP2Q9BZM5 246 aa23.28■■□□□ 1.32
CCDC88C-205ENST00000553403 BOLA2-SMG1P6H3BVE0 249 aa23.27■■□□□ 1.32
CCDC88C-205ENST00000553403 P2RY10O00398 339 aa23.27■■□□□ 1.32
CCDC88C-205ENST00000553403 EEF1E1O43324 174 aaKnown RBP23.27■■□□□ 1.32
CCDC88C-205ENST00000553403 TPPPO94811 219 aa23.27■■□□□ 1.32
CCDC88C-205ENST00000553403 TTRP02766 147 aa23.27■■□□□ 1.32
CCDC88C-205ENST00000553403 SP1P08047 785 aa23.27■■□□□ 1.32
CCDC88C-205ENST00000553403 ACSM4P0C7M7 580 aa23.27■■□□□ 1.32
CCDC88C-205ENST00000553403 KIR2DL3P43628 341 aa23.27■■□□□ 1.32
CCDC88C-205ENST00000553403 ART1P52961 327 aa23.27■■□□□ 1.32
CCDC88C-205ENST00000553403 GRB2P62993 217 aaKnown RBP23.27■■□□□ 1.32
CCDC88C-205ENST00000553403 SLC25A25Q6KCM7 469 aa23.27■■□□□ 1.32
CCDC88C-205ENST00000553403 NABP1Q96AH0 204 aa23.27■■□□□ 1.32
CCDC88C-205ENST00000553403 S100A16Q96FQ6 103 aaKnown RBP23.27■■□□□ 1.32
CCDC88C-205ENST00000553403 ZNF416Q9BWM5 594 aa23.27■■□□□ 1.32
CCDC88C-205ENST00000553403 TAS2R4Q9NYW5 299 aa23.27■■□□□ 1.32
CCDC88C-205ENST00000553403 NPAP1Q9NZP6 1156 aa23.27■■□□□ 1.32
CCDC88C-205ENST00000553403 CACNA1CQ13936 2221 aa23.27■■□□□ 1.32
CCDC88C-205ENST00000553403 OR5H15A6NDH6 313 aa23.26■■□□□ 1.31
CCDC88C-205ENST00000553403 SULT1B1O43704 296 aa23.26■■□□□ 1.31
CCDC88C-205ENST00000553403 NME2P1O60361 137 aa23.26■■□□□ 1.31
CCDC88C-205ENST00000553403 CYTIPO60759 359 aa23.26■■□□□ 1.31
CCDC88C-205ENST00000553403 NME2P22392 152 aa23.26■■□□□ 1.31
CCDC88C-205ENST00000553403 TGIF1Q15583 401 aa23.26■■□□□ 1.31
CCDC88C-205ENST00000553403 GLT8D1Q68CQ7 371 aa23.26■■□□□ 1.31
CCDC88C-205ENST00000553403 SYNPRQ8TBG9 265 aa23.26■■□□□ 1.31
CCDC88C-205ENST00000553403 ROBO4Q8WZ75 1007 aa23.26■■□□□ 1.31
CCDC88C-205ENST00000553403 HAVCR1Q96D42 359 aa23.26■■□□□ 1.31
CCDC88C-205ENST00000553403 ITPKCQ96DU7 683 aa23.26■■□□□ 1.31
CCDC88C-205ENST00000553403 AGAP4Q96P64 663 aa23.26■■□□□ 1.31
CCDC88C-205ENST00000553403 AHCTF1Q8WYP5 2266 aa23.26■■□□□ 1.31
CCDC88C-205ENST00000553403 SLC17A2O00624 439 aa23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 RER1O15258 196 aa23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 LANCL1O43813 399 aa23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 FAM157BP0CG42 384 aa23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 CTSSP25774 331 aa23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 MNDAP41218 407 aa23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 ENDOGQ14249 297 aaKnown RBP23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 YIPF5Q969M3 257 aa23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 DDX28Q9NUL7 540 aaKnown RBP23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 MRPS7Q9Y2R9 242 aaKnown RBP23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 ARGFXA6NJG6 315 aa23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 GLSO94925 669 aaPredicted RBP23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 LIPCP11150 499 aa23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 CEACAM1P13688 526 aa23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 HIST1H3AP68431 136 aa23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 RAB11BQ15907 218 aa23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 HYAL4Q2M3T9 481 aa23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 ATP1A1-AS1Q5TC04 95 aa23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 HIST2H3PS2Q5TEC6 136 aa23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 FAM166AQ6J272 317 aa23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 HIST2H3AQ71DI3 136 aa23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 GJC3Q8NFK1 279 aa23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 ZFP3Q96NJ6 502 aa23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 RBM24Q9BX46 236 aaKnown RBP23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 MMP28Q9H239 520 aa23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 ZNF275Q9NSD4 429 aaPredicted RBP23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 NCOR2Q9Y618 2525 aa23.25■■□□□ 1.31
CCDC88C-205ENST00000553403 CNOT1A5YKK6 2376 aaKnown RBP23.24■■□□□ 1.31
CCDC88C-205ENST00000553403 KLRC4-KLRK1H3BQV0 150 aa23.24■■□□□ 1.31
CCDC88C-205ENST00000553403 LHX2P50458 406 aa23.24■■□□□ 1.31
CCDC88C-205ENST00000553403 MRPS34P82930 218 aaKnown RBP23.24■■□□□ 1.31
CCDC88C-205ENST00000553403 PLGLB1Q02325 96 aa23.24■■□□□ 1.31
CCDC88C-205ENST00000553403 AGAP6Q5VW22 663 aa23.24■■□□□ 1.31
CCDC88C-205ENST00000553403 AAED1Q7RTV5 226 aa23.24■■□□□ 1.31
CCDC88C-205ENST00000553403 TMEM251Q8N6I4 163 aa23.24■■□□□ 1.31
CCDC88C-205ENST00000553403 C15orf40Q8WUR7 153 aa23.24■■□□□ 1.31
CCDC88C-205ENST00000553403 DOK2O60496 412 aa23.23■■□□□ 1.31
CCDC88C-205ENST00000553403 CD46P15529 392 aa23.23■■□□□ 1.31
CCDC88C-205ENST00000553403 UBE2J2Q8N2K1 259 aa23.23■■□□□ 1.31
CCDC88C-205ENST00000553403 SMIM4Q8WVI0 70 aa23.23■■□□□ 1.31
CCDC88C-205ENST00000553403 RNF121Q9H920 327 aa23.23■■□□□ 1.31
CCDC88C-205ENST00000553403 FAM240BA0A1B0GVZ2 78 aa23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 SYT7O43581 403 aa23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 RFC3P40938 356 aa23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 MEOX1P50221 254 aa23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 DGCR2P98153 550 aa23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 GPR176Q14439 515 aa23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 PLET1Q6UQ28 207 aa23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 GALNTL5Q7Z4T8 443 aa23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 LUZP2Q86TE4 346 aa23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 TMEM45BQ96B21 275 aa23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 A0A1B0GVI7 797 aa23.22■■□□□ 1.31
CCDC88C-205ENST00000553403 FAM166BA8MTA8 275 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms