RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 ATPIF1Q9UII2 106 aa12.12□□□□□ -0.47
PTCH1-226ENST00000553011 CSPG4Q6UVK1 2322 aa12.12□□□□□ -0.47
PTCH1-226ENST00000553011 PRODHO43272 600 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 TLX2O43763 284 aaPredicted RBP12.11□□□□□ -0.47
PTCH1-226ENST00000553011 SELENOFO60613 162 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 ICMTO60725 284 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 BMP4P12644 408 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 ZNF250P15622 560 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 MPV17P39210 176 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 ALDH3B1P43353 468 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 EFNB1P98172 346 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 APOFQ13790 326 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 RCN1Q15293 331 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 TMEM255AQ5JRV8 349 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 TEX30Q5JUR7 227 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 DPY19L4Q7Z388 723 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 TGIF2LYQ8IUE0 185 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 TIGD4Q8IY51 512 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 ZCCHC24Q8N2G6 241 aaKnown RBP12.11□□□□□ -0.47
PTCH1-226ENST00000553011 SYNPRQ8TBG9 265 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 EME1Q96AY2 570 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 MARS2Q96GW9 593 aaKnown RBP12.11□□□□□ -0.47
PTCH1-226ENST00000553011 SORCS2Q96PQ0 1159 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 IL4I1Q96RQ9 567 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 ATF6BQ99941 703 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 VRK1Q99986 396 aaPredicted RBP12.11□□□□□ -0.47
PTCH1-226ENST00000553011 OR2J1Q9GZK6 312 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 POFUT1Q9H488 388 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 ELOVL3Q9HB03 270 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 DYNLRB1Q9NP97 96 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 ORC6Q9Y5N6 252 aa12.11□□□□□ -0.47
PTCH1-226ENST00000553011 ZANQ9Y493 2812 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 CR1P17927 2039 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 IGLV3-9A0A075B6K5 115 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 A0A1W2PPW3 197 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 CCDC182A6NF36 153 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 F5H5K5 113 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 LY6HO94772 140 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 ADRA2AP08913 450 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 ANPEPP15144 967 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 NAA10P41227 235 aaPredicted RBP12.1□□□□□ -0.47
PTCH1-226ENST00000553011 EVX1P49640 407 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 PPOXP50336 477 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 RAD23AP54725 363 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 KLF3P57682 345 aaPredicted RBP12.1□□□□□ -0.47
PTCH1-226ENST00000553011 ECH1Q13011 328 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 ALKBH6Q3KRA9 238 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 KRTAP27-1Q3LI81 207 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 SLC35D3Q5M8T2 416 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 ARL9Q6T311 187 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 PRSS57Q6UWY2 283 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 UNQ6126/PRO20091Q6UXV3 157 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 ZBTB49Q6ZSB9 765 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 SPATC1Q76KD6 591 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 TMEM163Q8TC26 289 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 ST7LQ8TDW4 575 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 Q96MF0 132 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 DCLRE1CQ96SD1 692 aaKnown RBP12.1□□□□□ -0.47
PTCH1-226ENST00000553011 MBOAT4Q96T53 435 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 TOR3AQ9H497 397 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 CENPMQ9NSP4 180 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 TBCCD1Q9NVR7 557 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 TAAR3PQ9P1P4 343 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 STARD10Q9Y365 291 aa12.1□□□□□ -0.47
PTCH1-226ENST00000553011 M0R233 179 aa12.09□□□□□ -0.47
PTCH1-226ENST00000553011 SSX4O60224 188 aa12.09□□□□□ -0.47
PTCH1-226ENST00000553011 ACSM4P0C7M7 580 aa12.09□□□□□ -0.47
PTCH1-226ENST00000553011 NUDT6P53370 316 aa12.09□□□□□ -0.47
PTCH1-226ENST00000553011 EIF2B1Q14232 305 aaKnown RBP12.09□□□□□ -0.47
PTCH1-226ENST00000553011 ZNF718Q3SXZ3 478 aa12.09□□□□□ -0.47
PTCH1-226ENST00000553011 AADACL4Q5VUY2 407 aa12.09□□□□□ -0.47
PTCH1-226ENST00000553011 NAA40Q86UY6 237 aa12.09□□□□□ -0.47
PTCH1-226ENST00000553011 KLF14Q8TD94 323 aaPredicted RBP12.09□□□□□ -0.47
PTCH1-226ENST00000553011 IPCEF1Q8WWN9 437 aaPredicted RBP12.09□□□□□ -0.47
PTCH1-226ENST00000553011 SLAMF6Q96DU3 332 aa12.09□□□□□ -0.47
PTCH1-226ENST00000553011 AMELYQ99218 206 aa12.09□□□□□ -0.47
PTCH1-226ENST00000553011 TEAD3Q99594 435 aa12.09□□□□□ -0.47
PTCH1-226ENST00000553011 ABHD6Q9BV23 337 aa12.09□□□□□ -0.47
PTCH1-226ENST00000553011 TPK1Q9H3S4 243 aa12.09□□□□□ -0.47
PTCH1-226ENST00000553011 BARX1Q9HBU1 254 aaPredicted RBP12.09□□□□□ -0.47
PTCH1-226ENST00000553011 DDX28Q9NUL7 540 aaKnown RBP12.09□□□□□ -0.47
PTCH1-226ENST00000553011 VPS13CQ709C8 3753 aa12.09□□□□□ -0.47
PTCH1-226ENST00000553011 TRIM64A6NGJ6 449 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 TRIM64BA6NI03 449 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 E9PQ18 207 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 IGHV3-13P01766 116 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 MRPL3P09001 348 aaKnown RBP12.08□□□□□ -0.48
PTCH1-226ENST00000553011 NAT2P11245 290 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 GCH1P30793 250 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 RGS6P49758 472 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 PRKXP51817 358 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 EFNA4P52798 201 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 SELENOVP59797 346 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 TRIP10Q15642 601 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 NKPD1Q17RQ9 610 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 CLEC12BQ2HXU8 276 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 LCN1P1Q5VSP4 162 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 NXNL2Q5VZ03 156 aa12.08□□□□□ -0.48
PTCH1-226ENST00000553011 MBNL2Q5VZF2 373 aaKnown RBP12.08□□□□□ -0.48
PTCH1-226ENST00000553011 LPCAT4Q643R3 524 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms