RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 EPHA1P21709 976 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 CDKN2AP42771 156 aaKnown RBP9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 SRP9P49458 86 aaKnown RBP9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 HIST1H3AP68431 136 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 SPIBQ01892 262 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 COX10Q12887 443 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 SEC23BQ15437 767 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 CCDC92Q53HC0 331 aaPredicted RBP9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 HIST2H3PS2Q5TEC6 136 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 C1orf94Q6P1W5 598 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 FBXW12Q6X9E4 464 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 HIST2H3AQ71DI3 136 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 C1QL2Q7Z5L3 287 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 LRRC28Q86X40 367 aaPredicted RBP9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 MUC20Q8N307 709 aaPredicted RBP9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 ATG16L2Q8NAA4 619 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 OR8G5Q8NG78 346 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 OR2AJ1Q8NGZ0 328 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 FANK1Q8TC84 345 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 GNPDA2Q8TDQ7 276 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 CDRT15Q96T59 188 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 FUZQ9BT04 418 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 IFT27Q9BW83 186 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 RBM4Q9BWF3 364 aaKnown RBP9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 HCAR1Q9BXC0 346 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 FAM107BQ9H098 131 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 OR52D1Q9H346 318 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 NTN4Q9HB63 628 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 SRA1Q9HD15 236 aaKnown RBP9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 IL1RAPQ9NPH3 570 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 UBAP1Q9NZ09 502 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 IL20RAQ9UHF4 553 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 TAGLN3Q9UI15 199 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 KCNG2Q9UJ96 466 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 B9D1Q9UPM9 204 aa9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 POLR3KQ9Y2Y1 108 aaPredicted RBP9.2□□□□□ -0.94
VTI1BP3-201ENST00000550220 LRRC30A6NM36 301 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 DCTN3O75935 186 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 DIRAS1O95057 198 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 FSTL3O95633 263 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 PPP1R3DO95685 299 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 IGHV2-70P01814 119 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 SEMG1P04279 462 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 MDH2P40926 338 aaKnown RBP9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 HMGA2P52926 109 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 HILS1P60008 231 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 BTG1P62324 171 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 MALLQ13021 153 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 TMEM255AQ5JRV8 349 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 LEG1Q6P5S2 330 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 C12orf54Q6X4T0 127 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 PTCHD4Q6ZW05 846 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 ZBTB46Q86UZ6 589 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 OR6V1Q8N148 313 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 BPIFB2Q8N4F0 458 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 RNF148Q8N7C7 305 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 OR52L1Q8NGH7 329 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 FAM216AQ8WUB2 273 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 TMPRSS13Q9BYE2 586 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 PATZ1Q9HBE1 687 aaKnown RBP9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 CD300AQ9UGN4 299 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 ARL2BPQ9Y2Y0 163 aa9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 NOP16Q9Y3C1 178 aaKnown RBP9.19□□□□□ -0.94
VTI1BP3-201ENST00000550220 LOC105371242A0A075B767 164 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 IGLV1-36A0A0B4J1U3 117 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 ARPC2O15144 300 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 VENTXO95231 258 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 ADRA2CP18825 462 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 RRM2P31350 389 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 GSSP48637 474 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 FXYD6P3P58550 94 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 MXRA7P84157 204 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 SRSF2Q01130 221 aaKnown RBP9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 TSPAN31Q12999 210 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 ZNF181Q2M3W8 571 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 RBMS3Q6XE24 437 aaKnown RBP9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 Q6ZR03 302 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 C1orf87Q8N0U7 546 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 ARHGAP24Q8N264 748 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 FAM86B1Q8N7N1 296 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 SLC26A10Q8NG04 563 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 OR4C15Q8NGM1 316 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 OR4K13Q8NH42 304 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 SLC7A6Q92536 515 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 ERGIC1Q969X5 290 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 OR2V2Q96R30 315 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 NMNAT3Q96T66 252 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 PITX2Q99697 317 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 GPA33Q99795 319 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 C1QTNF5Q9BXJ0 243 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 TRIM15Q9C019 465 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 SLC22A4Q9H015 551 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 TMEM100Q9NV29 134 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 CYB5R1Q9UHQ9 305 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 LHFPL6Q9Y693 200 aa9.18□□□□□ -0.94
VTI1BP3-201ENST00000550220 IQCF6A8MYZ5 107 aa9.17□□□□□ -0.94
VTI1BP3-201ENST00000550220 TMEM178BH3BS89 294 aa9.17□□□□□ -0.94
VTI1BP3-201ENST00000550220 AVPP01185 164 aa9.17□□□□□ -0.94
VTI1BP3-201ENST00000550220 HLA-DQA2P01906 255 aa9.17□□□□□ -0.94
VTI1BP3-201ENST00000550220 DBHP09172 617 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms