RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 POMT2Q9UKY4 750 aa8.03□□□□□ -1.12
VPS13D-212ENST00000543766 PTPRJQ12913 1337 aa8.03□□□□□ -1.12
VPS13D-212ENST00000543766 SPAARA0A1B0GVQ0 90 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 CLDN1O95832 211 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 IL6RP08887 468 aaPredicted RBP8.02□□□□□ -1.13
VPS13D-212ENST00000543766 MIPP30301 263 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 PRDX2P32119 198 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 SSTR5P35346 364 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 FABP6P51161 128 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 RAB8AP61006 207 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 RIPPLY1Q0D2K3 151 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 RNF44Q7L0R7 432 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 OLIG3Q7RTU3 272 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 PHYKPLQ8IUZ5 450 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 OR4D5Q8NGN0 318 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 MARCH1Q8TCQ1 289 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 SFXN5Q8TD22 340 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 ORAOV1Q8WV07 137 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 PIGTQ969N2 578 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 LRRC58Q96CX6 371 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 MACROD1Q9BQ69 325 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 DEFB129Q9H1M3 183 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 FZD8Q9H461 694 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 MGAMO43451 1857 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 ZNF638Q14966 1978 aaKnown RBP8.02□□□□□ -1.13
VPS13D-212ENST00000543766 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.02□□□□□ -1.13
VPS13D-212ENST00000543766 FAM95CA0A1B0GW59 222 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.02□□□□□ -1.13
VPS13D-212ENST00000543766 HOXC6P09630 235 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 RAP2AP10114 183 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 POLR2HP52434 150 aaKnown RBP8.02□□□□□ -1.13
VPS13D-212ENST00000543766 SLC16A1P53985 500 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 GAS1P54826 345 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 DLX5P56178 289 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 ABHD18Q0P651 414 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 B3GNTL1Q67FW5 361 aaPredicted RBP8.02□□□□□ -1.13
VPS13D-212ENST00000543766 SLC35E3Q7Z769 313 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 OR1S1Q8NH92 325 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 OR14L1PQ8NHC6 308 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 PRODH2Q9UF12 536 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 FZD1Q9UP38 647 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 MMP24Q9Y5R2 645 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 MYLKQ15746 1914 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 COL1A2P08123 1366 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 DKK1O94907 266 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 TCN2P20062 427 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 AMTP48728 403 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 ATP1B3P54709 279 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 ERVPABLB-1P60509 514 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 ELAVL3Q14576 367 aaKnown RBP8.02□□□□□ -1.13
VPS13D-212ENST00000543766 TMEM132DQ14C87 1099 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 PRSS36Q5K4E3 855 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 SPANXN3Q5MJ09 141 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 ANKRD34AQ69YU3 496 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 TRMT1LQ7Z2T5 733 aaKnown RBP8.02□□□□□ -1.13
VPS13D-212ENST00000543766 C5orf24Q7Z6I8 188 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 PHYHIPLQ96FC7 376 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 ZC3HAV1LQ96H79 300 aaKnown RBP8.02□□□□□ -1.13
VPS13D-212ENST00000543766 LYSMD1Q96S90 227 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 LMF2Q9BU23 707 aaKnown RBP8.02□□□□□ -1.13
VPS13D-212ENST00000543766 P2RX2Q9UBL9 471 aa8.02□□□□□ -1.13
VPS13D-212ENST00000543766 ANK1P16157 1881 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 A0A1W2PRU2 124 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 TMPRSS2O15393 492 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 PRICKLE3O43900 615 aaPredicted RBP8.01□□□□□ -1.13
VPS13D-212ENST00000543766 TIMM8AO60220 97 aaPredicted RBP8.01□□□□□ -1.13
VPS13D-212ENST00000543766 THBS3P49746 956 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 F2RL1P55085 397 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 PAFAH1B2P68402 229 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 SPOCK1Q08629 439 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 PDE7AQ13946 482 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 TMEM211Q6ICI0 200 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 ZNF841Q6ZN19 808 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 ACBD7Q8N6N7 88 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 AMER3Q8N944 861 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 OR6K6Q8NGW6 343 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 OR4K15Q8NH41 348 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 OR5R1Q8NH85 324 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 CNIH3Q8TBE1 160 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 THAP4Q8WY91 577 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 CMBLQ96DG6 245 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 MRPL45Q9BRJ2 306 aaKnown RBP8.01□□□□□ -1.13
VPS13D-212ENST00000543766 ATG5Q9H1Y0 275 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 VPS29Q9UBQ0 182 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 HSPB8Q9UJY1 196 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 SLC7A7Q9UM01 511 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 A0A1B0GU03 582 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 ZCWPW2A0A1B0GU75 182 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 UNC119BA6NIH7 251 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 YDJCA8MPS7 323 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 AMBPP02760 352 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 CTSDP07339 412 aaPredicted RBP8.01□□□□□ -1.13
VPS13D-212ENST00000543766 GADD45AP24522 165 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 PJVKQ0ZLH3 352 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 NOL9Q5SY16 702 aaKnown RBP8.01□□□□□ -1.13
VPS13D-212ENST00000543766 OR10K2Q6IF99 312 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 DHRS11Q6UWP2 260 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 ZNF547Q8IVP9 402 aa8.01□□□□□ -1.13
VPS13D-212ENST00000543766 C19orf47Q8N9M1 422 aaKnown RBP8.01□□□□□ -1.13
VPS13D-212ENST00000543766 CADM4Q8NFZ8 388 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms