RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658		J3QRE1	110 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	SYNGR3	O43761	229 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	IGKV3-15	P01624	115 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	SERPINA5	P05154	406 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	C21orf33	P30042	268 aa	Predicted RBP	10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	ETV1	P50549	477 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	GBX2	P52951	348 aa	Predicted RBP	10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	WNT4	P56705	351 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	HIST1H3A	P68431	136 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	MVK	Q03426	396 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	TFF3	Q07654	80 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	MRPL28	Q13084	256 aa	Known RBP	10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	MED22	Q15528	200 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	C3orf36	Q3SXR2	165 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	CDON	Q4KMG0	1287 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	HIST2H3PS2	Q5TEC6	136 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	TMEM108	Q6UXF1	575 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	UNQ6126/PRO20091	Q6UXV3	157 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	HIST2H3A	Q71DI3	136 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	SYS1	Q8N2H4	156 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	FAM169B	Q8N8A8	192 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	IL17RD	Q8NFM7	739 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	TSPAN14	Q8NG11	270 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	OR52N1	Q8NH53	320 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	WFIKKN1	Q96NZ8	548 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	DCLRE1C	Q96SD1	692 aa	Known RBP	10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	AMELY	Q99218	206 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	KCNJ15	Q99712	375 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	CDCA4	Q9BXL8	241 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	ELOVL3	Q9HB03	270 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	NOX3	Q9HBY0	568 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	DDX28	Q9NUL7	540 aa	Known RBP	10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	SLCO1C1	Q9NYB5	712 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	EIF3K	Q9UBQ5	218 aa	Known RBP	10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	KLF2	Q9Y5W3	355 aa	Predicted RBP	10.35	□□□□□ -0.75
DDB1-223	ENST00000543658	CHD6	Q8TD26	2715 aa		10.35	□□□□□ -0.75
DDB1-223	ENST00000543658		M0R135	149 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	RPP14	O95059	124 aa	Known RBP	10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	ABHD16A	O95870	558 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	CRYAA	P02489	173 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	ANXA2	P07355	339 aa	Known RBP	10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	HTR1A	P08908	422 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	LIMS3	P0CW19	117 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	LIMS4	P0CW20	117 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	ATP6V1B1	P15313	513 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	ZNF14	P17017	642 aa	Predicted RBP	10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	OPRL1	P41146	370 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	KIR2DL3	P43628	341 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	CX3CR1	P49238	355 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	PRKX	P51817	358 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	CDH15	P55291	814 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	TAS2R43	P59537	309 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	ROM1	Q03395	351 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	SNTB1	Q13884	538 aa	Known RBP	10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	TBCE	Q15813	527 aa	Predicted RBP	10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	OR2G6	Q5TZ20	316 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	RNLS	Q5VYX0	342 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	OR10S1	Q8NGN2	331 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	LINC01560	Q8TB33	94 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	SPRYD4	Q8WW59	207 aa	Predicted RBP	10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	SGCD	Q92629	289 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	FCGR1B	Q92637	280 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	ZNF799	Q96GE5	643 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	MS4A3	Q96HJ5	214 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	DACH2	Q96NX9	599 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	ESRP2	Q9H6T0	727 aa	Known RBP	10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	MOB1A	Q9H8S9	216 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	BRD7	Q9NPI1	651 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	PNRC2	Q9NPJ4	139 aa	Known RBP	10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	TRIM36	Q9NQ86	728 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	CRNN	Q9UBG3	495 aa	Predicted RBP	10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	GRIP1	Q9Y3R0	1128 aa		10.34	□□□□□ -0.75
DDB1-223	ENST00000543658	SPTBN1	Q01082	2364 aa	Known RBP	10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	IGHV1-18	A0A0C4DH31	117 aa		10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	WIPF3	A6NGB9	483 aa		10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	LOC110117498-PIK3R3	F6TDL0	507 aa		10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	MAGEB4	O15481	346 aa	Predicted RBP	10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	TBX1	O43435	398 aa		10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	CELA3B	P08861	270 aa		10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	CECR9	P0C854	216 aa		10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	PTAFR	P25105	342 aa		10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	DCTD	P32321	178 aa		10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	RGS6	P49758	472 aa		10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	OR12D2	P58182	307 aa		10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	PSMA6	P60900	246 aa	Known RBP	10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	BEX5	Q5H9J7	111 aa		10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	DRAM2	Q6UX65	266 aa		10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	MEX3B	Q6ZN04	569 aa	Known RBP	10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	ZNF367	Q7RTV3	350 aa		10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	EGFL6	Q8IUX8	553 aa		10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	NANOGP1	Q8N7R0	232 aa		10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	CPEB3	Q8NE35	698 aa	Known RBP	10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	PGAM5	Q96HS1	289 aa		10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	RADIL	Q96JH8	1075 aa		10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	DOK1	Q99704	481 aa		10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	MRPS26	Q9BYN8	205 aa	Known RBP	10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	NPDC1	Q9NQX5	325 aa	Predicted RBP	10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	ACOXL	Q9NUZ1	547 aa		10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	CLEC2D	Q9UHP7	191 aa		10.33	□□□□□ -0.76
DDB1-223	ENST00000543658	MRM2	Q9UI43	246 aa	Known RBP	10.33	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms