RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 CLRN1P58418 232 aa8.79□□□□□ -1
SS18-205ENST00000542420 LSM6P62312 80 aaKnown RBP8.79□□□□□ -1
SS18-205ENST00000542420 DHODHQ02127 395 aa8.79□□□□□ -1
SS18-205ENST00000542420 CHAF1BQ13112 559 aa8.79□□□□□ -1
SS18-205ENST00000542420 ETFDHQ16134 617 aa8.79□□□□□ -1
SS18-205ENST00000542420 ST3GAL2Q16842 350 aa8.79□□□□□ -1
SS18-205ENST00000542420 BTBD16Q32M84 506 aa8.79□□□□□ -1
SS18-205ENST00000542420 ZNF528Q3MIS6 628 aa8.79□□□□□ -1
SS18-205ENST00000542420 LSRQ86X29 649 aaPredicted RBP8.79□□□□□ -1
SS18-205ENST00000542420 C9orf62Q8N4C0 152 aa8.79□□□□□ -1
SS18-205ENST00000542420 TMEM229BQ8NBD8 167 aa8.79□□□□□ -1
SS18-205ENST00000542420 DNAAF1Q8NEP3 725 aa8.79□□□□□ -1
SS18-205ENST00000542420 OR11H7Q8NGC8 314 aa8.79□□□□□ -1
SS18-205ENST00000542420 OR52H1Q8NGJ2 320 aa8.79□□□□□ -1
SS18-205ENST00000542420 OR13C3Q8NGS6 347 aa8.79□□□□□ -1
SS18-205ENST00000542420 GPX8Q8TED1 209 aa8.79□□□□□ -1
SS18-205ENST00000542420 C11orf40Q8WZ69 217 aa8.79□□□□□ -1
SS18-205ENST00000542420 ORAI1Q96D31 301 aa8.79□□□□□ -1
SS18-205ENST00000542420 SLAMF6Q96DU3 332 aa8.79□□□□□ -1
SS18-205ENST00000542420 IFT22Q9H7X7 185 aa8.79□□□□□ -1
SS18-205ENST00000542420 UPB1Q9UBR1 384 aa8.79□□□□□ -1
SS18-205ENST00000542420 ELF5Q9UKW6 265 aaPredicted RBP8.79□□□□□ -1
SS18-205ENST00000542420 SLC22A13Q9Y226 551 aa8.79□□□□□ -1
SS18-205ENST00000542420 PHF3Q92576 2039 aaKnown RBP8.79□□□□□ -1
SS18-205ENST00000542420 TMEM272A0A1B0GTI8 110 aa8.79□□□□□ -1
SS18-205ENST00000542420 TMEM269A0A1B0GVZ9 245 aa8.79□□□□□ -1
SS18-205ENST00000542420 GJE1A6NN92 205 aa8.79□□□□□ -1
SS18-205ENST00000542420 BPNT1O95861 308 aa8.79□□□□□ -1
SS18-205ENST00000542420 GIPP09681 153 aaPredicted RBP8.79□□□□□ -1
SS18-205ENST00000542420 CCL1P22362 96 aa8.79□□□□□ -1
SS18-205ENST00000542420 MAGEB1P43366 347 aa8.79□□□□□ -1
SS18-205ENST00000542420 CCR6P51684 374 aa8.79□□□□□ -1
SS18-205ENST00000542420 CLDN12P56749 244 aa8.79□□□□□ -1
SS18-205ENST00000542420 GRB2P62993 217 aaKnown RBP8.79□□□□□ -1
SS18-205ENST00000542420 SIGLEC14Q08ET2 396 aa8.79□□□□□ -1
SS18-205ENST00000542420 IGSF11Q5DX21 431 aa8.79□□□□□ -1
SS18-205ENST00000542420 C10orf128Q5T292 105 aa8.79□□□□□ -1
SS18-205ENST00000542420 ZNF626Q68DY1 528 aa8.79□□□□□ -1
SS18-205ENST00000542420 ASPHD2Q6ICH7 369 aa8.79□□□□□ -1
SS18-205ENST00000542420 TMPPEQ6ZT21 453 aa8.79□□□□□ -1
SS18-205ENST00000542420 SERPINA12Q8IW75 414 aa8.79□□□□□ -1
SS18-205ENST00000542420 WDSUB1Q8N9V3 476 aa8.79□□□□□ -1
SS18-205ENST00000542420 OR6N1Q8NGY5 312 aa8.79□□□□□ -1
SS18-205ENST00000542420 ATOH1Q92858 354 aaPredicted RBP8.79□□□□□ -1
SS18-205ENST00000542420 GUCD1Q96NT3 240 aa8.79□□□□□ -1
SS18-205ENST00000542420 NAA11Q9BSU3 229 aaPredicted RBP8.79□□□□□ -1
SS18-205ENST00000542420 TMPRSS13Q9BYE2 586 aa8.79□□□□□ -1
SS18-205ENST00000542420 NOX3Q9HBY0 568 aa8.79□□□□□ -1
SS18-205ENST00000542420 ZFP64Q9NPA5 681 aa8.79□□□□□ -1
SS18-205ENST00000542420 MRPS18CQ9Y3D5 142 aaKnown RBP8.79□□□□□ -1
SS18-205ENST00000542420 I3L521 148 aa8.78□□□□□ -1
SS18-205ENST00000542420 FABP7O15540 132 aa8.78□□□□□ -1
SS18-205ENST00000542420 SLC22A5O76082 557 aa8.78□□□□□ -1
SS18-205ENST00000542420 LPLP06858 475 aa8.78□□□□□ -1
SS18-205ENST00000542420 UMODP07911 640 aa8.78□□□□□ -1
SS18-205ENST00000542420 RPS27P42677 84 aaKnown RBP8.78□□□□□ -1
SS18-205ENST00000542420 SSR4P51571 173 aa8.78□□□□□ -1
SS18-205ENST00000542420 SUCLG1P53597 346 aaKnown RBP8.78□□□□□ -1
SS18-205ENST00000542420 TAS2R19P59542 299 aa8.78□□□□□ -1
SS18-205ENST00000542420 H3F3AP84243 136 aa8.78□□□□□ -1
SS18-205ENST00000542420 BAMBIQ13145 260 aa8.78□□□□□ -1
SS18-205ENST00000542420 TSSK4Q6SA08 328 aa8.78□□□□□ -1
SS18-205ENST00000542420 DBX2Q6ZNG2 339 aa8.78□□□□□ -1
SS18-205ENST00000542420 C16orf47Q6ZP98 133 aaPredicted RBP8.78□□□□□ -1
SS18-205ENST00000542420 PGAP1Q75T13 922 aa8.78□□□□□ -1
SS18-205ENST00000542420 OR2W3Q7Z3T1 314 aa8.78□□□□□ -1
SS18-205ENST00000542420 GPAT4Q86UL3 456 aa8.78□□□□□ -1
SS18-205ENST00000542420 IZUMO1Q8IYV9 350 aa8.78□□□□□ -1
SS18-205ENST00000542420 OR51D1Q8NGF3 324 aa8.78□□□□□ -1
SS18-205ENST00000542420 OR2AJ1Q8NGZ0 328 aa8.78□□□□□ -1
SS18-205ENST00000542420 SGCZQ96LD1 299 aa8.78□□□□□ -1
SS18-205ENST00000542420 ZNF436Q9C0F3 470 aaPredicted RBP8.78□□□□□ -1
SS18-205ENST00000542420 METTL17Q9H7H0 456 aaPredicted RBP8.78□□□□□ -1
SS18-205ENST00000542420 APMAPQ9HDC9 416 aa8.78□□□□□ -1
SS18-205ENST00000542420 TAS2R4Q9NYW5 299 aa8.78□□□□□ -1
SS18-205ENST00000542420 ING1Q9UK53 422 aaPredicted RBP8.78□□□□□ -1
SS18-205ENST00000542420 RAB22AQ9UL26 194 aa8.78□□□□□ -1
SS18-205ENST00000542420 EMC9Q9Y3B6 208 aa8.78□□□□□ -1
SS18-205ENST00000542420 RHBDD3Q9Y3P4 386 aa8.78□□□□□ -1
SS18-205ENST00000542420 RANBP2P49792 3224 aaKnown RBP8.78□□□□□ -1
SS18-205ENST00000542420 RPS10-NUDT3A0A1W2PQS6 291 aa8.77□□□□□ -1
SS18-205ENST00000542420 METTL21EPA6NDL7 271 aa8.77□□□□□ -1
SS18-205ENST00000542420 TSPAN4O14817 238 aa8.77□□□□□ -1
SS18-205ENST00000542420 CREBL2O60519 120 aaPredicted RBP8.77□□□□□ -1
SS18-205ENST00000542420 GMDSO60547 372 aa8.77□□□□□ -1
SS18-205ENST00000542420 KLF7O75840 302 aaPredicted RBP8.77□□□□□ -1
SS18-205ENST00000542420 RGS11O94810 467 aa8.77□□□□□ -1
SS18-205ENST00000542420 APOC1P02654 83 aa8.77□□□□□ -1
SS18-205ENST00000542420 ALDOBP05062 364 aa8.77□□□□□ -1
SS18-205ENST00000542420 CFIP05156 583 aa8.77□□□□□ -1
SS18-205ENST00000542420 ZNF43P17038 809 aa8.77□□□□□ -1
SS18-205ENST00000542420 BDKRB2P30411 391 aa8.77□□□□□ -1
SS18-205ENST00000542420 FOLR3P41439 243 aa8.77□□□□□ -1
SS18-205ENST00000542420 MLF1P58340 268 aa8.77□□□□□ -1
SS18-205ENST00000542420 CSNK2A1P68400 391 aaPredicted RBP8.77□□□□□ -1
SS18-205ENST00000542420 MPPED2Q15777 294 aa8.77□□□□□ -1
SS18-205ENST00000542420 OR5M10Q6IEU7 315 aa8.77□□□□□ -1
SS18-205ENST00000542420 LCN10Q6JVE6 187 aa8.77□□□□□ -1
SS18-205ENST00000542420 Q6ZSR3 168 aa8.77□□□□□ -1
SS18-205ENST00000542420 SLC22A24Q8N4F4 322 aa8.77□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms