RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 CCDC107Q8WV48 283 aa11.2□□□□□ -0.62
RNF4-222ENST00000541204 MRPS24Q96EL2 167 aaKnown RBP11.2□□□□□ -0.62
RNF4-222ENST00000541204 PTDSS2Q9BVG9 487 aa11.2□□□□□ -0.62
RNF4-222ENST00000541204 POTEKPQ9BYX7 375 aa11.2□□□□□ -0.62
RNF4-222ENST00000541204 SLC17A5Q9NRA2 495 aa11.2□□□□□ -0.62
RNF4-222ENST00000541204 UPB1Q9UBR1 384 aa11.2□□□□□ -0.62
RNF4-222ENST00000541204 IGHV5-10-1A0A0J9YXX1 117 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 TRBV11-1A0A0K0K1C0 115 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 PATE3B3GLJ2 98 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 FADS1O60427 444 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 APOC3P02656 99 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 LIPCP11150 499 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 HLA-DOBP13765 273 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 MOGAT2Q3SYC2 334 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 LRRC37A5PQ49AS3 106 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 GLT8D1Q68CQ7 371 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 FAM122CQ6P4D5 195 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 KMT5CQ86Y97 462 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 ZNF441Q8N8Z8 693 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 CCDC74BQ96LY2 380 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 LDAHQ9H6V9 325 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 SUSD2Q9UGT4 822 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 LY6G6EA0A0G2JKS1 128 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 A0A1W2PPC1 479 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 TO15178 435 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 EIF4E2O60573 245 aaKnown RBP11.19□□□□□ -0.62
RNF4-222ENST00000541204 MPZL1O95297 269 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 CTLA4P16410 223 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 ZNF28P17035 718 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 SSBP1Q04837 148 aaKnown RBP11.19□□□□□ -0.62
RNF4-222ENST00000541204 EIF2B1Q14232 305 aaKnown RBP11.19□□□□□ -0.62
RNF4-222ENST00000541204 ATPAF1Q5TC12 328 aaPredicted RBP11.19□□□□□ -0.62
RNF4-222ENST00000541204 C1orf140Q5VVS0 124 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 PAPD4Q6PIY7 484 aaKnown RBP11.19□□□□□ -0.62
RNF4-222ENST00000541204 MAMDC2Q7Z304 686 aaPredicted RBP11.19□□□□□ -0.62
RNF4-222ENST00000541204 TMEM229BQ8NBD8 167 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 PXT1Q8NFP0 134 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 ASB17Q8WXJ9 295 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 ST8SIA2Q92186 375 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 THRSPQ92748 146 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 FBXW5Q969U6 566 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 SLC25A44Q96H78 314 aaPredicted RBP11.19□□□□□ -0.62
RNF4-222ENST00000541204 ZNF587Q96SQ5 575 aaPredicted RBP11.19□□□□□ -0.62
RNF4-222ENST00000541204 CMKLR1Q99788 373 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 WDR13Q9H1Z4 485 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 GAREM1Q9H706 876 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 SEMA5BQ9P283 1151 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 CKLFQ9UBR5 152 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 RARRES3Q9UL19 164 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 SRPK3Q9UPE1 567 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 LRP12Q9Y561 859 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 U3KQA8 63 aa11.19□□□□□ -0.62
RNF4-222ENST00000541204 CCSO14618 274 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 TOR1AO14656 332 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 CYB5AP00167 134 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 POLR2HP52434 150 aaKnown RBP11.18□□□□□ -0.62
RNF4-222ENST00000541204 RPL27P61353 136 aaKnown RBP11.18□□□□□ -0.62
RNF4-222ENST00000541204 SPOCK1Q08629 439 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 DHRS2Q13268 280 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 BEX5Q5H9J7 111 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 EIF4E3Q8N5X7 224 aaKnown RBP11.18□□□□□ -0.62
RNF4-222ENST00000541204 PLPP5Q8NEB5 264 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 OR4S1Q8NGB4 309 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 OR10K1Q8NGX5 313 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 SAP25Q8TEE9 199 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 ARL5BQ96KC2 179 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 ABHD6Q9BV23 337 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 PRMT8Q9NR22 394 aaPredicted RBP11.18□□□□□ -0.62
RNF4-222ENST00000541204 OCIAD1Q9NX40 245 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 GLS2Q9UI32 602 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 HRH3Q9Y5N1 445 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 LOC100509620A0A075B734 347 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 OR5H14A6NHG9 310 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 H3BML4 177 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 CD2P06729 351 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 MELTFP08582 738 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 ZNF735P0CB33 412 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 MGMTP16455 207 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 RIDAP52758 137 aaKnown RBP11.18□□□□□ -0.62
RNF4-222ENST00000541204 EMP2P54851 167 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 ACY1Q03154 408 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 INPP5JQ15735 1006 aaPredicted RBP11.18□□□□□ -0.62
RNF4-222ENST00000541204 NKPD1Q17RQ9 610 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 CATSPERDQ86XM0 798 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 BPIFB2Q8N4F0 458 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 JAGN1Q8N5M9 183 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 ZNF519Q8TB69 540 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 NKD1Q969G9 470 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 SEC22AQ96IW7 307 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 SLC25A21Q9BQT8 299 aaPredicted RBP11.18□□□□□ -0.62
RNF4-222ENST00000541204 AIFM2Q9BRQ8 373 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 TMEM185BQ9H7F4 350 aa11.18□□□□□ -0.62
RNF4-222ENST00000541204 IGLV1-36A0A0B4J1U3 117 aa11.17□□□□□ -0.62
RNF4-222ENST00000541204 A0A1W2PQD3 144 aa11.17□□□□□ -0.62
RNF4-222ENST00000541204 TMEM235A6NFC5 223 aa11.17□□□□□ -0.62
RNF4-222ENST00000541204 ZNF736B4DX44 427 aaPredicted RBP11.17□□□□□ -0.62
RNF4-222ENST00000541204 SULT1C2O00338 296 aa11.17□□□□□ -0.62
RNF4-222ENST00000541204 IGFBP3P17936 291 aaPredicted RBP11.17□□□□□ -0.62
RNF4-222ENST00000541204 DCDP81605 110 aaKnown RBP11.17□□□□□ -0.62
RNF4-222ENST00000541204 ROM1Q03395 351 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms