RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 ACOT8O14734 319 aa7.51□□□□□ -1.21
USP28-205ENST00000537706 BAG2O95816 211 aa7.51□□□□□ -1.21
USP28-205ENST00000537706 CHATP28329 748 aa7.51□□□□□ -1.21
USP28-205ENST00000537706 ERFP50548 548 aa7.51□□□□□ -1.21
USP28-205ENST00000537706 HNRNPA0Q13151 305 aaKnown RBP7.51□□□□□ -1.21
USP28-205ENST00000537706 LY6EQ16553 131 aa7.51□□□□□ -1.21
USP28-205ENST00000537706 RUNDC3AQ59EK9 446 aa7.51□□□□□ -1.21
USP28-205ENST00000537706 TCTEX1D4Q5JR98 221 aa7.51□□□□□ -1.21
USP28-205ENST00000537706 BLOC1S3Q6QNY0 202 aa7.51□□□□□ -1.21
USP28-205ENST00000537706 PEX5LQ8IYB4 626 aa7.51□□□□□ -1.21
USP28-205ENST00000537706 OR11L1Q8NGX0 322 aa7.51□□□□□ -1.21
USP28-205ENST00000537706 OR2T11Q8NH01 316 aa7.51□□□□□ -1.21
USP28-205ENST00000537706 PTDSS2Q9BVG9 487 aa7.51□□□□□ -1.21
USP28-205ENST00000537706 ZMAT4Q9H898 229 aa7.51□□□□□ -1.21
USP28-205ENST00000537706 ADA2Q9NZK5 511 aa7.51□□□□□ -1.21
USP28-205ENST00000537706 ZIM2Q9NZV7 527 aa7.51□□□□□ -1.21
USP28-205ENST00000537706 ABCD2Q9UBJ2 740 aa7.51□□□□□ -1.21
USP28-205ENST00000537706 ELOVL7A1L3X0 281 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 FXYD1O00168 92 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 SLC22A3O75751 556 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 CCDC159P0C7I6 412 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 TRAP1Q12931 704 aaKnown RBP7.5□□□□□ -1.21
USP28-205ENST00000537706 LIN52Q52LA3 116 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 PABPC1L2AQ5JQF8 200 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 TNFAIP8L2Q6P589 184 aaPredicted RBP7.5□□□□□ -1.21
USP28-205ENST00000537706 METAP1DQ6UB28 335 aaPredicted RBP7.5□□□□□ -1.21
USP28-205ENST00000537706 IZUMO2Q6UXV1 221 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 ZNF841Q6ZN19 808 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 ZNF101Q8IZC7 436 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 PQLC1Q8N2U9 271 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 ZNF420Q8TAQ5 688 aaPredicted RBP7.5□□□□□ -1.21
USP28-205ENST00000537706 ISOC1Q96CN7 298 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 SPDL1Q96EA4 605 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 SSX3Q99909 188 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 ECSITQ9BQ95 431 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 SEMA6AQ9H2E6 1030 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 MTHFD2LQ9H903 347 aaPredicted RBP7.5□□□□□ -1.21
USP28-205ENST00000537706 TRIM36Q9NQ86 728 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 NANSQ9NR45 359 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 BATF3Q9NR55 127 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 GID8Q9NWU2 228 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 CD300AQ9UGN4 299 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 TRAV36DV7A0A075B6V5 113 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 PRSS51A0A1B0GVH4 220 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 MEIOCA2RUB1 952 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 LSM1O15116 133 aaKnown RBP7.5□□□□□ -1.21
USP28-205ENST00000537706 GKN3PP0CG01 181 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 WNT5AP41221 380 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 SLC7A2P52569 658 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 CLNS1AP54105 237 aaKnown RBP7.5□□□□□ -1.21
USP28-205ENST00000537706 MS4A2Q01362 244 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 PLAURQ03405 335 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 EMX2Q04743 252 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 TRIM25Q14258 630 aaKnown RBP7.5□□□□□ -1.21
USP28-205ENST00000537706 CDONQ4KMG0 1287 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 C6orf136Q5SQH8 315 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 C6orf10Q5SRN2 563 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 LYPD2Q6UXB3 125 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 ALDH16A1Q8IZ83 802 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 FNDC5Q8NAU1 212 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 BEND2Q8NDZ0 799 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 OR51G2Q8NGK0 314 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 TMEM54Q969K7 222 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 TXNDC15Q96J42 360 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 PPP3R2Q96LZ3 170 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 ZNF583Q96ND8 569 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 TRNT1Q96Q11 434 aaKnown RBP7.5□□□□□ -1.21
USP28-205ENST00000537706 DDOQ99489 341 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 EPYCQ99645 322 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 HOPXQ9BPY8 73 aaPredicted RBP7.5□□□□□ -1.21
USP28-205ENST00000537706 DUSP26Q9BV47 211 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 TSSC4Q9Y5U2 329 aaPredicted RBP7.5□□□□□ -1.21
USP28-205ENST00000537706 HERC2O95714 4834 aa7.5□□□□□ -1.21
USP28-205ENST00000537706 TCRBV4S1A1TA0A5B7 111 aa7.49□□□□□ -1.21
USP28-205ENST00000537706 PRORSD1PA6NEY8 169 aa7.49□□□□□ -1.21
USP28-205ENST00000537706 SERPINI2O75830 405 aa7.49□□□□□ -1.21
USP28-205ENST00000537706 HSD17B1P14061 328 aa7.49□□□□□ -1.21
USP28-205ENST00000537706 SNRPBP14678 240 aaKnown RBP7.49□□□□□ -1.21
USP28-205ENST00000537706 CBLP22681 906 aa7.49□□□□□ -1.21
USP28-205ENST00000537706 PEX2P28328 305 aa7.49□□□□□ -1.21
USP28-205ENST00000537706 ACAA2P42765 397 aaKnown RBP7.49□□□□□ -1.21
USP28-205ENST00000537706 GATA4P43694 442 aa7.49□□□□□ -1.21
USP28-205ENST00000537706 BIDP55957 195 aa7.49□□□□□ -1.21
USP28-205ENST00000537706 NME5P56597 212 aa7.49□□□□□ -1.21
USP28-205ENST00000537706 HBA1P69905 142 aa7.49□□□□□ -1.21
USP28-205ENST00000537706 TXNL4AP83876 142 aaKnown RBP7.49□□□□□ -1.21
USP28-205ENST00000537706 PUDPQ08623 228 aa7.49□□□□□ -1.21
USP28-205ENST00000537706 PSG7Q13046 419 aa7.49□□□□□ -1.21
USP28-205ENST00000537706 MAD2L1Q13257 205 aaPredicted RBP7.49□□□□□ -1.21
USP28-205ENST00000537706 LRRC75BQ2VPJ9 315 aa7.49□□□□□ -1.21
USP28-205ENST00000537706 OGFRL1Q5TC84 451 aaPredicted RBP7.49□□□□□ -1.21
USP28-205ENST00000537706 IL23RQ5VWK5 629 aa7.49□□□□□ -1.21
USP28-205ENST00000537706 RFPL4BQ6ZWI9 263 aa7.49□□□□□ -1.21
USP28-205ENST00000537706 RNF148Q8N7C7 305 aa7.49□□□□□ -1.21
USP28-205ENST00000537706 OR51D1Q8NGF3 324 aa7.49□□□□□ -1.21
USP28-205ENST00000537706 OR4A15Q8NGL6 344 aa7.49□□□□□ -1.21
USP28-205ENST00000537706 TFAP2CQ92754 450 aa7.49□□□□□ -1.21
USP28-205ENST00000537706 ZNF566Q969W8 418 aa7.49□□□□□ -1.21
USP28-205ENST00000537706 DUS3LQ96G46 650 aaKnown RBP7.49□□□□□ -1.21
USP28-205ENST00000537706 MEGF10Q96KG7 1140 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms