RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 MED29Q9NX70 200 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 ZNF281Q9Y2X9 895 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 AKAP9Q99996 3911 aa10.54□□□□□ -0.72
CLIP1-208ENST00000537004 A0A087WZY1 265 aa10.54□□□□□ -0.72
CLIP1-208ENST00000537004 A0A0G2JK05 382 aa10.54□□□□□ -0.72
CLIP1-208ENST00000537004 A0A1W2PNR3 127 aa10.54□□□□□ -0.72
CLIP1-208ENST00000537004 OR2M5A3KFT3 312 aa10.54□□□□□ -0.72
CLIP1-208ENST00000537004 HOXD4P09016 255 aaPredicted RBP10.54□□□□□ -0.72
CLIP1-208ENST00000537004 COX6B1P14854 86 aa10.54□□□□□ -0.72
CLIP1-208ENST00000537004 CPN1P15169 458 aa10.54□□□□□ -0.72
CLIP1-208ENST00000537004 RAB3BP20337 219 aa10.54□□□□□ -0.72
CLIP1-208ENST00000537004 SFTPDP35247 375 aa10.54□□□□□ -0.72
CLIP1-208ENST00000537004 THBS2P35442 1172 aa10.54□□□□□ -0.72
CLIP1-208ENST00000537004 EVX1P49640 407 aa10.54□□□□□ -0.72
CLIP1-208ENST00000537004 CLDN18P56856 261 aa10.54□□□□□ -0.72
CLIP1-208ENST00000537004 ALKBH1Q13686 389 aaKnown RBP10.54□□□□□ -0.72
CLIP1-208ENST00000537004 BAK1Q16611 211 aa10.54□□□□□ -0.72
CLIP1-208ENST00000537004 YIF1BQ5BJH7 314 aa10.54□□□□□ -0.72
CLIP1-208ENST00000537004 NSUN5P2Q63ZY6 315 aa10.54□□□□□ -0.72
CLIP1-208ENST00000537004 UNQ9370/PRO34162Q6UXP9 181 aa10.54□□□□□ -0.72
CLIP1-208ENST00000537004 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.54□□□□□ -0.72
CLIP1-208ENST00000537004 ZNF295-AS1Q8N0V1 137 aa10.54□□□□□ -0.72
CLIP1-208ENST00000537004 GTPBP8Q8N3Z3 284 aaPredicted RBP10.54□□□□□ -0.72
CLIP1-208ENST00000537004 RGP1Q92546 391 aaPredicted RBP10.54□□□□□ -0.72
CLIP1-208ENST00000537004 HTRA1Q92743 480 aa10.54□□□□□ -0.72
CLIP1-208ENST00000537004 KCTD12Q96CX2 325 aaKnown RBP10.54□□□□□ -0.72
CLIP1-208ENST00000537004 TXNDC15Q96J42 360 aa10.54□□□□□ -0.72
CLIP1-208ENST00000537004 KCNK17Q96T54 332 aa10.54□□□□□ -0.72
CLIP1-208ENST00000537004 B3GAT1Q9P2W7 334 aa10.54□□□□□ -0.72
CLIP1-208ENST00000537004 COA3Q9Y2R0 106 aaPredicted RBP10.54□□□□□ -0.72
CLIP1-208ENST00000537004 ANKHD1Q8IWZ3 2542 aaKnown RBP10.54□□□□□ -0.72
CLIP1-208ENST00000537004 ZNF879B4DU55 563 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 SEC14L5O43304 696 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 SPARCP09486 303 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 IL7P13232 177 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 ZNF708P17019 499 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 FKBP2P26885 142 aaKnown RBP10.53□□□□□ -0.72
CLIP1-208ENST00000537004 CEACAM8P31997 349 aaPredicted RBP10.53□□□□□ -0.72
CLIP1-208ENST00000537004 PTGER4P35408 488 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 SUCLG1P53597 346 aaKnown RBP10.53□□□□□ -0.72
CLIP1-208ENST00000537004 CLDN20P56880 219 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 ADAM8P78325 824 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 FMODQ06828 376 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 FOXF2Q12947 444 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 TMEM176BQ3YBM2 270 aaPredicted RBP10.53□□□□□ -0.72
CLIP1-208ENST00000537004 RIPPLY2Q5TAB7 128 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 MEX3BQ6ZN04 569 aaKnown RBP10.53□□□□□ -0.72
CLIP1-208ENST00000537004 GCNT2Q8N0V5 402 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 GDPD1Q8N9F7 314 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 RELL2Q8NC24 303 aaPredicted RBP10.53□□□□□ -0.72
CLIP1-208ENST00000537004 ADPRHL1Q8NDY3 354 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 OR5AK2Q8NH90 309 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 PHYHIPQ92561 330 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 MAP6Q96JE9 813 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 SLCO1C1Q9NYB5 712 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 FRRS1LQ9P0K9 344 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 ADAM30Q9UKF2 790 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 RASD1Q9Y272 281 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 MRPS18CQ9Y3D5 142 aaKnown RBP10.53□□□□□ -0.72
CLIP1-208ENST00000537004 HSPB2A8KAH6 182 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 CENPBD1B2RD01 187 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 TGM6O95932 706 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 IL2RAP01589 272 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 P2RY4P51582 365 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 BIDP55957 195 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 OR2B6P58173 313 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 MADCAM1Q13477 382 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 HSPB2Q16082 182 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 MEP1BQ16820 701 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 SLC25A35Q3KQZ1 300 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 HSD17B12Q53GQ0 312 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 PYDC2Q56P42 97 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 SLC18B1Q6NT16 456 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 DNM1P34Q6PK57 102 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 METAP1DQ6UB28 335 aaPredicted RBP10.53□□□□□ -0.72
CLIP1-208ENST00000537004 SYT9Q86SS6 491 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 ASB17Q8WXJ9 295 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 NSMAFQ92636 917 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 OR8B4Q96RC9 309 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 SOSTQ9BQB4 213 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 NOX4Q9NPH5 578 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 TBC1D24Q9ULP9 559 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 HDGFL3Q9Y3E1 203 aa10.53□□□□□ -0.72
CLIP1-208ENST00000537004 HRNRQ86YZ3 2850 aaPredicted RBP10.52□□□□□ -0.72
CLIP1-208ENST00000537004 A0A1W2PQ09 198 aa10.52□□□□□ -0.73
CLIP1-208ENST00000537004 ACOD1A6NK06 481 aa10.52□□□□□ -0.73
CLIP1-208ENST00000537004 MPZL1O95297 269 aa10.52□□□□□ -0.73
CLIP1-208ENST00000537004 SLC2A2P11168 524 aaPredicted RBP10.52□□□□□ -0.73
CLIP1-208ENST00000537004 SPNP16150 400 aa10.52□□□□□ -0.73
CLIP1-208ENST00000537004 IGFBP2P18065 325 aa10.52□□□□□ -0.73
CLIP1-208ENST00000537004 ELK1P19419 428 aa10.52□□□□□ -0.73
CLIP1-208ENST00000537004 POU3F2P20265 443 aaPredicted RBP10.52□□□□□ -0.73
CLIP1-208ENST00000537004 TIMP3P35625 211 aa10.52□□□□□ -0.73
CLIP1-208ENST00000537004 CEP78Q5JTW2 689 aa10.52□□□□□ -0.73
CLIP1-208ENST00000537004 LRRN1Q6UXK5 716 aa10.52□□□□□ -0.73
CLIP1-208ENST00000537004 NHLRC1Q6VVB1 395 aa10.52□□□□□ -0.73
CLIP1-208ENST00000537004 ADGRE4PQ86SQ3 457 aa10.52□□□□□ -0.73
CLIP1-208ENST00000537004 UEVLDQ8IX04 471 aa10.52□□□□□ -0.73
CLIP1-208ENST00000537004 SLC26A10Q8NG04 563 aa10.52□□□□□ -0.73
CLIP1-208ENST00000537004 OR2G2Q8NGZ5 317 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms