RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 ELFN2Q5R3F8 820 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 HIST2H3PS2Q5TEC6 136 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 ADAM5Q6NVV9 412 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 CFAP77Q6ZQR2 320 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 USP51Q70EK9 711 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 HIST2H3AQ71DI3 136 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 VASH1Q7L8A9 365 aaPredicted RBP8.69□□□□□ -1.02
NUP54-203ENST00000504173 SLC16A9Q7RTY1 509 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 DPY19L4Q7Z388 723 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 DCXRQ7Z4W1 244 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 ZNF584Q8IVC4 421 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 CPEB3Q8NE35 698 aaKnown RBP8.69□□□□□ -1.02
NUP54-203ENST00000504173 IL17RDQ8NFM7 739 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 OR51G2Q8NGK0 314 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 OR1J2Q8NGS2 313 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 CNIH3Q8TBE1 160 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 APH1BQ8WW43 257 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 TMEM158Q8WZ71 300 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 RNFT2Q96EX2 444 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 MAP6Q96JE9 813 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 RADILQ96JH8 1075 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 COX4I2Q96KJ9 171 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 HS3ST6Q96QI5 342 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 HDHD2Q9H0R4 259 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 CDH20Q9HBT6 801 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 HAO2Q9NYQ3 351 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 RNF115Q9Y4L5 304 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 NOTCH1P46531 2555 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 IGHV2OR16-5A0A0B4J2B6 119 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 INAFM1C9JVW0 142 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 ATP6V1G2-DDX39BF2Z307 99 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 SYNGR3O43761 229 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 APOL3O95236 402 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 COX5BP10606 129 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 CCL2P13500 99 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 CCNOP22674 350 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 STOMP27105 288 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 LOXP28300 417 aaPredicted RBP8.68□□□□□ -1.02
NUP54-203ENST00000504173 MTNR1AP48039 350 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 ZNF91Q05481 1191 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 TAF13Q15543 124 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 SLC22A25Q6T423 547 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 ZNF704Q6ZNC4 412 aaPredicted RBP8.68□□□□□ -1.02
NUP54-203ENST00000504173 SPATC1Q76KD6 591 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 THAP5Q7Z6K1 395 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 KRTAP1-3Q8IUG1 177 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 SLC35F2Q8IXU6 374 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 ZNF454Q8N9F8 522 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 KBTBD8Q8NFY9 601 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 OR1F12Q8NHA8 337 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 OTOSQ8NHW6 89 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 THEM6Q8WUY1 208 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 ZNF184Q99676 751 aaPredicted RBP8.68□□□□□ -1.02
NUP54-203ENST00000504173 COQ7Q99807 217 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 ABHD6Q9BV23 337 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 YIPF3Q9GZM5 350 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 ADGRL4Q9HBW9 690 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 CENPMQ9NSP4 180 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 LAMP5Q9UJQ1 280 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 POU2F3Q9UKI9 436 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 RAB26Q9ULW5 256 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 PLEKHA6Q9Y2H5 1048 aa8.68□□□□□ -1.02
NUP54-203ENST00000504173 C5orf49A4QMS7 147 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 OR6C6A6NF89 314 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 ZNF878C9JN71 531 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 WBP4O75554 376 aaKnown RBP8.67□□□□□ -1.02
NUP54-203ENST00000504173 CTAG2O75638 210 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 PLAUP00749 431 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 LYNP07948 512 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 SBK2P0C263 348 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 DBTP11182 482 aaKnown RBP8.67□□□□□ -1.02
NUP54-203ENST00000504173 CALCRP30988 508 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 HCCSP53701 268 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 GALK2Q01415 458 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 ECH1Q13011 328 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 CDK5R2Q13319 367 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 SMN1Q16637 294 aaKnown RBP8.67□□□□□ -1.02
NUP54-203ENST00000504173 CDC20BQ86Y33 519 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 OR4F15Q8NGB8 312 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 OR10S1Q8NGN2 331 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 ST7LQ8TDW4 575 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 SMAP2Q8WU79 429 aaPredicted RBP8.67□□□□□ -1.02
NUP54-203ENST00000504173 SLC7A6Q92536 515 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 SLAMF6Q96DU3 332 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 POM121L2Q96KW2 1035 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 MNTQ99583 582 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 TBX5Q99593 518 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 ATF6BQ99941 703 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 TMEM204Q9BSN7 226 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 COPS4Q9BT78 406 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 ANKRD60Q9BZ19 345 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 CLEC4MQ9H2X3 399 aaPredicted RBP8.67□□□□□ -1.02
NUP54-203ENST00000504173 Q9H521 79 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 AMBNQ9NP70 447 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 PNRC2Q9NPJ4 139 aaKnown RBP8.67□□□□□ -1.02
NUP54-203ENST00000504173 EIF3KQ9UBQ5 218 aaKnown RBP8.67□□□□□ -1.02
NUP54-203ENST00000504173 ATPIF1Q9UII2 106 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 KLHDC2Q9Y2U9 406 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 RPL36Q9Y3U8 105 aaKnown RBP8.67□□□□□ -1.02
NUP54-203ENST00000504173 TMEM14AQ9Y6G1 99 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms