RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ZNF454Q8N9F8 522 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 STK35Q8TDR2 534 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 DUSP19Q8WTR2 217 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ST8SIA4Q92187 359 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 DMRTA2Q96SC8 542 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 FXYD6Q9H0Q3 95 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 POFUT1Q9H488 388 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 RHBDD3Q9Y3P4 386 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 R4GMQ9 66 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 TNRC6BQ9UPQ9 1833 aaKnown RBP14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 MS4A18H0YCH9 400 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 LMX1BO60663 402 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 RP2O75695 350 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 CFIP05156 583 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 LPLP06858 475 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ZNF735P0CB33 412 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 FBLP22087 321 aaKnown RBP14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 SLC26A5P58743 744 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 TAS2R19P59542 299 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ACTBP60709 375 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ACTG1P63261 375 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 HSD11B2P80365 405 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 MS4A18Q3C1V0 323 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 C4orf46Q504U0 113 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 LYSMD4Q5XG99 296 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ZNF627Q7L945 461 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 SLC29A4Q7RTT9 530 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 SCARB1Q8WTV0 552 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 TNFAIP8L1Q8WVP5 186 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 GAL3ST1Q99999 423 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 TINAGL1Q9GZM7 467 aaPredicted RBP14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 VN1R1Q9GZP7 353 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ARL6Q9H0F7 186 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 TMEM138Q9NPI0 162 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 EMC9Q9Y3B6 208 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 DCDC2BA2VCK2 349 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 LMO7DNF2Z398 122 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 M0QYG6 137 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ALOX12BO75342 701 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 AHSA1O95433 338 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 RAB3DO95716 219 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 CD2P06729 351 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 FOLR1P15328 257 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 CRABP1P29762 137 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 FLI1Q01543 452 aaPredicted RBP14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 GLO1Q04760 184 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ZMYND11Q15326 602 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 MOGAT2Q3SYC2 334 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 LY6G6FQ5SQ64 297 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 LANCL3Q6ZV70 420 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 SLC26A10Q8NG04 563 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 OR6M1Q8NGM8 313 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 LINC00052Q96N35 136 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ZNF416Q9BWM5 594 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 CKLFQ9UBR5 152 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 COPS7AQ9UBW8 275 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 HRH3Q9Y5N1 445 aa14.38□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ASCC3Q8N3C0 2202 aaKnown RBP14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 LOC101059948A0A1B0GTJ6 334 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 RHPN2P1A8MT19 583 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 PRR33A8MZF0 331 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 BCAT2O15382 392 aaPredicted RBP14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 OR4E1P0C645 316 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 MYF5P13349 255 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ARRB1P49407 418 aaPredicted RBP14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 FMODQ06828 376 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 NR0B2Q15466 257 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 C1orf189Q5VU69 101 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 OR10K2Q6IF99 312 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 NAXDQ8IW45 347 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 COQ8AQ8NI60 647 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ST7LQ8TDW4 575 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 PCDHB16Q9NRJ7 776 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 MYEF2Q9P2K5 600 aaKnown RBP14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 HHLA2Q9UM44 414 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 SPTBN2O15020 2390 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 TRAV14DV4A0A0A6YYC5 116 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 IGKV1D-43A0A0B4J1Z2 117 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 LOC107986453A0A1B0GWG9 222 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 LOC390937A0A1W2PQ73 354 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 WIPF3A6NGB9 483 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 POM121CA8CG34 1229 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 PMS2P2O95744 297 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ISG15P05161 165 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 FOXL2P58012 376 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 SORDQ00796 357 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 SPOCK1Q08629 439 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 PMPCAQ10713 525 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 BTN1A1Q13410 526 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 PCK2Q16822 640 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 C1orf100Q5SVJ3 147 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 GSG1LQ6UXU4 331 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 C16orf47Q6ZP98 133 aaPredicted RBP14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ADGRE4PQ86SQ3 457 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 CADM4Q8NFZ8 388 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 OR13C3Q8NGS6 347 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 CMKLR1Q99788 373 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 OR52A1Q9UKL2 312 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 MKL2Q9ULH7 1088 aa14.37□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 EXPH5Q8NEV8 1989 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms