RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 FAM209AQ5JX71 171 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 UCN2Q96RP3 112 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 C7orf50Q9BRJ6 194 aaKnown RBP7.43□□□□□ -1.22
USP54-215ENST00000497106 RSPO3Q9BXY4 272 aaPredicted RBP7.43□□□□□ -1.22
USP54-215ENST00000497106 STEAP1Q9UHE8 339 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 NUFIP1Q9UHK0 495 aaKnown RBP7.43□□□□□ -1.22
USP54-215ENST00000497106 KCNMB2Q9Y691 235 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 TP53BP1Q12888 1972 aaPredicted RBP7.42□□□□□ -1.22
USP54-215ENST00000497106 SHC1P29353 583 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 MPGP29372 298 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 ID4P47928 161 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 ATP1B3P54709 279 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 FAPQ12884 760 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 GFRALQ6UXV0 394 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 BEND4Q6ZU67 534 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 LIX1LQ8IVB5 337 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 CSNK2A3Q8NEV1 391 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 ZNF775Q96BV0 537 aaPredicted RBP7.42□□□□□ -1.22
USP54-215ENST00000497106 UBL7Q96S82 380 aaPredicted RBP7.42□□□□□ -1.22
USP54-215ENST00000497106 UQCC2Q9BRT2 126 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 AK6Q9Y3D8 172 aaKnown RBP7.42□□□□□ -1.22
USP54-215ENST00000497106 NINQ8N4C6 2090 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 NCOR1O75376 2440 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 BPNT1O95861 308 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 THBS4P35443 961 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 MMP16P51512 607 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 RPS23P62266 143 aaKnown RBP7.42□□□□□ -1.22
USP54-215ENST00000497106 SOWAHCQ53LP3 525 aaPredicted RBP7.42□□□□□ -1.22
USP54-215ENST00000497106 OR6K3Q8NGY3 331 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 RFT1Q96AA3 541 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 BORCS8Q96FH0 119 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 DEPPQ9NTK1 212 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 KCNN3Q9UGI6 736 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 COPS3Q9UNS2 423 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 SLC22A13Q9Y226 551 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 DNAH12Q6ZR08 3092 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 A0A1W2PPK0 400 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 MASP2O00187 686 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 P2RY10O00398 339 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 SULT1B1O43704 296 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 RPS19P39019 145 aaKnown RBP7.42□□□□□ -1.22
USP54-215ENST00000497106 TMEM69Q5SWH9 247 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 NUFIP2Q7Z417 695 aaKnown RBP7.42□□□□□ -1.22
USP54-215ENST00000497106 ALKBH3Q96Q83 286 aaPredicted RBP7.42□□□□□ -1.22
USP54-215ENST00000497106 SRXN1Q9BYN0 137 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 TP63Q9H3D4 680 aaPredicted RBP7.42□□□□□ -1.22
USP54-215ENST00000497106 C12orf49Q9H741 205 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 OBP2BQ9NPH6 170 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 TMEM138Q9NPI0 162 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 AMDHD2Q9Y303 409 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 UGT2A1Q9Y4X1 527 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 SCN2AQ99250 2005 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 AIPO00170 330 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 PITPNBP48739 271 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 ARF1P84077 181 aaKnown RBP7.42□□□□□ -1.22
USP54-215ENST00000497106 ANKRD16Q6P6B7 361 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 IGFL3Q6UXB1 125 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 CATSPERDQ86XM0 798 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 CHST4Q8NCG5 386 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 STEAP2Q8NFT2 490 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 SEMA6DQ8NFY4 1073 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 FCAMRQ8WWV6 532 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 PP6455Q8WZ26 134 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 MED30Q96HR3 178 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 PDCD1LG2Q9BQ51 273 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 ST6GALNAC2Q9UJ37 374 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 KLK13Q9UKR3 277 aa7.42□□□□□ -1.22
USP54-215ENST00000497106 A0A0G2JMM0 328 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 A0A1W2PPB8 328 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 A0A1W2PRS3 328 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 KIR3DP1A8MWS1 328 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 ABHD16AO95870 558 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 RFPL3SP0C7P2 107 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 GCH1P30793 250 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 SELENOPP49908 381 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 LHX2P50458 406 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 CXADRP78310 365 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 WDR38Q5JTN6 314 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 C1orf185Q5T7R7 199 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 RPUSD3Q6P087 351 aaKnown RBP7.41□□□□□ -1.22
USP54-215ENST00000497106 CD200R1LQ6Q8B3 271 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 PLET1Q6UQ28 207 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 C1orf174Q8IYL3 243 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 TOMM5Q8N4H5 51 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 FNDC9Q8TBE3 224 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 APOBEC3DQ96AK3 386 aaPredicted RBP7.41□□□□□ -1.22
USP54-215ENST00000497106 ZNF416Q9BWM5 594 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 IFT46Q9NQC8 304 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 GHRLQ9UBU3 117 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 IGKV3D-15A0A087WSY6 115 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 GLSO94925 669 aaPredicted RBP7.41□□□□□ -1.22
USP54-215ENST00000497106 CNOT4O95628 575 aaKnown RBP7.41□□□□□ -1.22
USP54-215ENST00000497106 COX5BP10606 129 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 B4GALT1P15291 398 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 SUCLG1P53597 346 aaKnown RBP7.41□□□□□ -1.22
USP54-215ENST00000497106 CLDN18P56856 261 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 ZNF684Q5T5D7 378 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 FBXW9Q5XUX1 488 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 AWAT2Q6E213 333 aa7.41□□□□□ -1.22
USP54-215ENST00000497106 CNIH2Q6PI25 160 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms