RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 C1QTNF5Q9BXJ0 243 aa5.56□□□□□ -1.52
VIM-207ENST00000495528 SRXN1Q9BYN0 137 aa5.56□□□□□ -1.52
VIM-207ENST00000495528 TRIM15Q9C019 465 aa5.56□□□□□ -1.52
VIM-207ENST00000495528 ZNF350Q9GZX5 532 aa5.56□□□□□ -1.52
VIM-207ENST00000495528 MUC13Q9H3R2 512 aa5.56□□□□□ -1.52
VIM-207ENST00000495528 PPP1R3EQ9H7J1 279 aa5.56□□□□□ -1.52
VIM-207ENST00000495528 NGBQ9NPG2 151 aa5.56□□□□□ -1.52
VIM-207ENST00000495528 HINT3Q9NQE9 182 aaKnown RBP5.56□□□□□ -1.52
VIM-207ENST00000495528 POLE3Q9NRF9 147 aa5.56□□□□□ -1.52
VIM-207ENST00000495528 MED17Q9NVC6 651 aa5.56□□□□□ -1.52
VIM-207ENST00000495528 PAQR5Q9NXK6 330 aaPredicted RBP5.56□□□□□ -1.52
VIM-207ENST00000495528 MALT1Q9UDY8 824 aa5.56□□□□□ -1.52
VIM-207ENST00000495528 RPS6KA6Q9UK32 745 aa5.56□□□□□ -1.52
VIM-207ENST00000495528 AURKCQ9UQB9 309 aa5.56□□□□□ -1.52
VIM-207ENST00000495528 B3GALT5Q9Y2C3 310 aa5.56□□□□□ -1.52
VIM-207ENST00000495528 SH3GLB1Q9Y371 365 aa5.56□□□□□ -1.52
VIM-207ENST00000495528 CR1P17927 2039 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 MXRA5Q9NR99 2828 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 A0A087WZY1 265 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 TCRBV3S1A0A5B6 114 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 SERINC4A6NH21 518 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 SHISA9B4DS77 424 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 NPIPB9F8W1W9 429 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 LGI1O95970 557 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 CSTAP01040 98 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 GUSBP08236 651 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 GKN3PP0CG01 181 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 UMPSP11172 480 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 IL32P24001 234 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 LCN1P31025 176 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 SFTPDP35247 375 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 YAP1P46937 504 aaKnown RBP5.55□□□□□ -1.52
VIM-207ENST00000495528 F2RL1P55085 397 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 ACTR3P61158 418 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 HOXC5Q00444 222 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 CHRNB3Q05901 458 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 ZNF141Q15928 474 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 ZNF239Q16600 458 aaKnown RBP5.55□□□□□ -1.52
VIM-207ENST00000495528 IZUMO4Q1ZYL8 232 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 TMEM249Q2WGJ8 235 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 PLPPR5Q32ZL2 321 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 NDUFAF6Q330K2 333 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 FAM98BQ52LJ0 330 aaKnown RBP5.55□□□□□ -1.52
VIM-207ENST00000495528 PDSS1Q5T2R2 415 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 ZNF836Q6ZNA1 936 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 RBM45Q8IUH3 476 aaKnown RBP5.55□□□□□ -1.52
VIM-207ENST00000495528 C10orf67Q8IYJ2 551 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 FAM86B1Q8N7N1 296 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 GPR32P1Q8NGA4 272 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 OR52E4Q8NGH9 312 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 VANGL1Q8TAA9 524 aaPredicted RBP5.55□□□□□ -1.52
VIM-207ENST00000495528 RNF128Q8TEB7 428 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 RASSF5Q8WWW0 418 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 PYDC1Q8WXC3 89 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 PROX1Q92786 737 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 SLCO4A1Q96BD0 722 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 SH3YL1Q96HL8 342 aaPredicted RBP5.55□□□□□ -1.52
VIM-207ENST00000495528 TNFRSF13CQ96RJ3 184 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 WFDC6Q9BQY6 131 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 BEX2Q9BXY8 128 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 KCNN2Q9H2S1 579 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 ARMC7Q9H6L4 198 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 KRT84Q9NSB2 600 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 SAMD4AQ9UPU9 718 aaKnown RBP5.55□□□□□ -1.52
VIM-207ENST00000495528 ZNF443Q9Y2A4 671 aaPredicted RBP5.55□□□□□ -1.52
VIM-207ENST00000495528 RRP15Q9Y3B9 282 aaKnown RBP5.55□□□□□ -1.52
VIM-207ENST00000495528 NBEAL1Q6ZS30 2694 aa5.55□□□□□ -1.52
VIM-207ENST00000495528 DSPPQ9NZW4 1301 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 CADP27708 2225 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 DHRS12A0PJE2 317 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 E7EQL1 145 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 H3BNH8 94 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 hCG_2039718K7EN88 272 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 VCYO14598 125 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 ZNF264O43296 627 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 KIAA0513O60268 411 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 PAGE4O60829 102 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 BCAS1O75363 584 aaPredicted RBP5.54□□□□□ -1.52
VIM-207ENST00000495528 LYZL6O75951 148 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 DIRAS1O95057 198 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 BAG2O95816 211 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 MT-ND1P03886 318 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 YES1P07947 543 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 LINGO3P0C6S8 592 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 UBTFL6P0CB48 400 aaPredicted RBP5.54□□□□□ -1.52
VIM-207ENST00000495528 IGHV4-30-4P0DP06 118 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 PRG2P13727 222 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 RPS4Y1P22090 263 aaKnown RBP5.54□□□□□ -1.52
VIM-207ENST00000495528 EDNRAP25101 427 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 ZNF41P51814 821 aaPredicted RBP5.54□□□□□ -1.52
VIM-207ENST00000495528 SEC61A1P61619 476 aaKnown RBP5.54□□□□□ -1.52
VIM-207ENST00000495528 TUBA1BP68363 451 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 VLDLRP98155 873 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 LOXL1Q08397 574 aaPredicted RBP5.54□□□□□ -1.52
VIM-207ENST00000495528 FOXF1Q12946 379 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 P2RY6Q15077 328 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 CD226Q15762 336 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 STK11Q15831 433 aa5.54□□□□□ -1.52
VIM-207ENST00000495528 TMEM176BQ3YBM2 270 aaPredicted RBP5.54□□□□□ -1.52
VIM-207ENST00000495528 IFI44LQ53G44 452 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms