RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 C1QBP02746 253 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 H2BFMP0C1H6 154 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 GABRA1P14867 456 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 ZNF43P17038 809 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 RAB6AP20340 208 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 CCL1P22362 96 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 CDK2P24941 298 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 HSD11B1P28845 292 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 ERP29P30040 261 aaKnown RBP9.53□□□□□ -0.88
USP4-214ENST00000491791 GDNFP39905 211 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 CLRN1P58418 232 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 TAS2R20P59543 309 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 C19orf57Q0VDD7 668 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 RAB11BQ15907 218 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 BCL2A1Q16548 175 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 ZFP69Q49AA0 526 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 TMEM69Q5SWH9 247 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 CD276Q5ZPR3 534 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 LRFN4Q6PJG9 635 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 TIPARPQ7Z3E1 657 aaKnown RBP9.53□□□□□ -0.88
USP4-214ENST00000491791 UBE2J2Q8N2K1 259 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 TMEM156Q8N614 296 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 CCDC54Q8NEL0 328 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 OR10S1Q8NGN2 331 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 OR52I2Q8NH67 350 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 OR56B4Q8NH76 319 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 CT55Q8WUE5 264 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 TSEN15Q8WW01 171 aaKnown RBP9.53□□□□□ -0.88
USP4-214ENST00000491791 AKAP1Q92667 903 aaKnown RBP eCLIP9.53□□□□□ -0.88
USP4-214ENST00000491791 FAM3DQ96BQ1 224 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 SLAMF6Q96DU3 332 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 PIGQQ9BRB3 760 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 NUDT16L1Q9BRJ7 211 aaKnown RBP9.53□□□□□ -0.88
USP4-214ENST00000491791 CACNG6Q9BXT2 260 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 ZNF160Q9HCG1 818 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 DIABLOQ9NR28 239 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 DDX28Q9NUL7 540 aaKnown RBP9.53□□□□□ -0.88
USP4-214ENST00000491791 HPF1Q9NWY4 346 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 TAS2R8Q9NYW2 309 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 GDF2Q9UK05 429 aaPredicted RBP9.53□□□□□ -0.88
USP4-214ENST00000491791 POU2F3Q9UKI9 436 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 FARSAQ9Y285 508 aaKnown RBP9.53□□□□□ -0.88
USP4-214ENST00000491791 LHFPL6Q9Y693 200 aa9.53□□□□□ -0.88
USP4-214ENST00000491791 A0A1W2PNR3 127 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 GGT3PA6NGU5 568 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 ZNF726A6NNF4 738 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 ZNF878C9JN71 531 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 H7C417 338 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 DOK2O60496 412 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 PRAF2O60831 178 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 ALX3O95076 343 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 IGLV3-1P01715 115 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 TTRP02766 147 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 MAS1P04201 325 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 YES1P07947 543 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 MELTFP08582 738 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 ITGA5P08648 1049 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 ACSM4P0C7M7 580 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 GZMKP49863 264 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 RAC3P60763 192 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 PSMA6P60900 246 aaKnown RBP9.52□□□□□ -0.89
USP4-214ENST00000491791 FOXK1P85037 733 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 Q0VFX4 171 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 MADCAM1Q13477 382 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 C2orf76Q3KRA6 126 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 BCL2L15Q5TBC7 163 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 ESPNLQ6ZVH7 1005 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 CREB3L2Q70SY1 520 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 RAB11FIP2Q7L804 512 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 NOXA1Q86UR1 476 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 TMEM123Q8N131 208 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 ESX1Q8N693 406 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 PSMF1Q92530 271 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 DNAJA3Q96EY1 480 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 UQCC2Q9BRT2 126 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 HELZ2Q9BYK8 2649 aaKnown RBP9.52□□□□□ -0.89
USP4-214ENST00000491791 SLCO5A1Q9H2Y9 848 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 SCPEP1Q9HB40 452 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 HRASLSQ9HDD0 168 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 PNRC2Q9NPJ4 139 aaKnown RBP9.52□□□□□ -0.89
USP4-214ENST00000491791 ING3Q9NXR8 418 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 PTTG3PQ9NZH4 202 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 MTFP1Q9UDX5 166 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 MRPS7Q9Y2R9 242 aaKnown RBP9.52□□□□□ -0.89
USP4-214ENST00000491791 EMC9Q9Y3B6 208 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 FLVCR1Q9Y5Y0 555 aa9.52□□□□□ -0.89
USP4-214ENST00000491791 FLNBO75369 2602 aaKnown RBP9.52□□□□□ -0.89
USP4-214ENST00000491791 CCDC187A0A096LP49 1063 aa9.51□□□□□ -0.89
USP4-214ENST00000491791 A0A0A6YYJ9 748 aa9.51□□□□□ -0.89
USP4-214ENST00000491791 A0A1B0GTI1 187 aa9.51□□□□□ -0.89
USP4-214ENST00000491791 TEX51A0A1B0GUA7 166 aa9.51□□□□□ -0.89
USP4-214ENST00000491791 LOC107986453A0A1B0GWG9 222 aa9.51□□□□□ -0.89
USP4-214ENST00000491791 C9orf172C9J069 976 aa9.51□□□□□ -0.89
USP4-214ENST00000491791 CTAG2O75638 210 aa9.51□□□□□ -0.89
USP4-214ENST00000491791 TGM6O95932 706 aa9.51□□□□□ -0.89
USP4-214ENST00000491791 H2AFB2P0C5Z0 115 aa9.51□□□□□ -0.89
USP4-214ENST00000491791 TCN2P20062 427 aa9.51□□□□□ -0.89
USP4-214ENST00000491791 PSMB1P20618 241 aaKnown RBP9.51□□□□□ -0.89
USP4-214ENST00000491791 GIFP27352 417 aa9.51□□□□□ -0.89
USP4-214ENST00000491791 HTR2CP28335 458 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms