RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 TAS2R31P59538 309 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 TCEA2Q15560 299 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 MOGAT2Q3SYC2 334 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 CORO6Q6QEF8 472 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 SLC35D2Q76EJ3 337 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 FJX1Q86VR8 437 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 C15orf54Q8N8G6 183 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 AQP3Q92482 292 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 FAM3CQ92520 227 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 TCEAL7Q9BRU2 100 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 TGIF2Q9GZN2 237 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 CYTL1Q9NRR1 136 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 DTX4Q9Y2E6 619 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 WIF1Q9Y5W5 379 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 DBX1A6NMT0 343 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 COLCA2A8K830 154 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 FOXS1O43638 330 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 CD37P11049 281 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 DNASE1L1P49184 302 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 CCR4P51679 360 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 HABP2Q14520 560 aaPredicted RBP11.94□□□□□ -0.5
USP40-214ENST00000483519 NNATQ16517 81 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 KCTD18Q6PI47 426 aaPredicted RBP11.94□□□□□ -0.5
USP40-214ENST00000483519 MRGPRFQ96AM1 343 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 HRH4Q9H3N8 390 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 CHD9Q3L8U1 2897 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 A0A1W2PQU0 124 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 DCDC2BA2VCK2 349 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 XKRYO14609 159 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 EFSO43281 561 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 PNPP00491 289 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 MUC1P15941 1255 aaPredicted RBP11.93□□□□□ -0.5
USP40-214ENST00000483519 LTBRP36941 435 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 RIDAP52758 137 aaKnown RBP11.93□□□□□ -0.5
USP40-214ENST00000483519 MST1LQ2TV78 715 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 KLHL26Q53HC5 615 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 EIF5AL1Q6IS14 154 aaKnown RBP11.93□□□□□ -0.5
USP40-214ENST00000483519 ZNF585AQ6P3V2 769 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 CSNK1A1LQ8N752 337 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 BCORP1Q8N888 145 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 ACBD4Q8NC06 268 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 RELTQ969Z4 430 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 CPNE2Q96FN4 548 aaPredicted RBP11.93□□□□□ -0.5
USP40-214ENST00000483519 RBM14Q96PK6 669 aaKnown RBP11.93□□□□□ -0.5
USP40-214ENST00000483519 SEC61A2Q9H9S3 476 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 FAM96BQ9Y3D0 163 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 HEATR5AQ86XA9 2040 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 UBE2CO00762 179 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 OR6A2O95222 327 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 IFNA6P05013 189 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 SFTA3P0C7M3 94 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 TBPP20226 339 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 ABCD3P28288 659 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 WASP42768 502 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 SLC6A9P48067 706 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 EIF5AP63241 154 aaKnown RBP11.93□□□□□ -0.5
USP40-214ENST00000483519 ROM1Q03395 351 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 SMAD4Q13485 552 aaKnown RBP11.93□□□□□ -0.5
USP40-214ENST00000483519 NKAIN3Q8N8D7 197 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 ZSCAN4Q8NAM6 433 aaPredicted RBP11.93□□□□□ -0.5
USP40-214ENST00000483519 MICU1Q9BPX6 476 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 S1PR5Q9H228 398 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 GSN-AS1Q9NRJ2 163 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 GDE1Q9NZC3 331 aa11.93□□□□□ -0.5
USP40-214ENST00000483519 TRBV23OR9-2A0A075B6M9 112 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 TRAV20A0A0B4J274 112 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 C5orf52A6NGY3 159 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 OR2T1O43869 369 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.92□□□□□ -0.5
USP40-214ENST00000483519 ZNF260Q3ZCT1 412 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 OR10K2Q6IF99 312 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 SLC16A13Q7RTY0 426 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 NUP54Q7Z3B4 507 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 C12orf76Q8N812 135 aaPredicted RBP11.92□□□□□ -0.5
USP40-214ENST00000483519 ADAD2Q8NCV1 583 aaKnown RBP11.92□□□□□ -0.5
USP40-214ENST00000483519 OR13C3Q8NGS6 347 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 ADAMTS17Q8TE56 1095 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 NKD1Q969G9 470 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 SMIM8Q96KF7 97 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 RNF126Q9BV68 326 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 EGLN1Q9GZT9 426 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 RAB22AQ9UL26 194 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 MRPS33Q9Y291 106 aaKnown RBP11.92□□□□□ -0.5
USP40-214ENST00000483519 MPDZO75970 2070 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 RNASEK-C17orf49H0YIS7 233 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 HRKO00198 91 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 SPARCP09486 303 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 CT45A8P0DMV1 189 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 CT45A9P0DMV2 189 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 HPGDP15428 266 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 HRH1P35367 487 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 EGR4Q05215 589 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 MFGE8Q08431 387 aaPredicted RBP11.92□□□□□ -0.5
USP40-214ENST00000483519 SPOCK1Q08629 439 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 CT45A2Q5DJT8 189 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 C1orf100Q5SVJ3 147 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 CATSPERDQ86XM0 798 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 GATSQ8NAP1 163 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 SMRP1Q8NCR6 262 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 BAHD1Q8TBE0 780 aaPredicted RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms