RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 RASD2Q96D21 266 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 MRPL38Q96DV4 380 aaKnown RBP12.2□□□□□ -0.46
COL6A3-209ENST00000472056 RAB6CQ9H0N0 254 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 MANBALQ9NQG1 85 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 SLC23A1Q9UHI7 598 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 PIGLQ9Y2B2 252 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 SSSCA1O60232 199 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 RPS23P62266 143 aaKnown RBP12.2□□□□□ -0.46
COL6A3-209ENST00000472056 PPP2CAP67775 309 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 C6orf132Q5T0Z8 1188 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 PRICKLE2Q7Z3G6 844 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 LMNTD1Q8N9Z9 388 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 RELTQ969Z4 430 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 TMED3Q9Y3Q3 217 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 CNMDO75829 334 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 GP1BAP07359 652 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 ELNP15502 786 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 TMPRSS11FQ6ZWK6 438 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 GDPD3Q7L5L3 318 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 GDF7Q7Z4P5 450 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 OR2M7Q8NG81 312 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 OR4D10Q8NGI6 311 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 OR5AR1Q8NGP9 310 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 YIPF6Q96EC8 236 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 EGLN1Q9GZT9 426 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 NXF5Q9H1B4 397 aaKnown RBP12.2□□□□□ -0.46
COL6A3-209ENST00000472056 ZNF236Q9UL36 1845 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 TCRBV21S2A2A0A5A6 115 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 CD46P15529 392 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 NME1P15531 152 aaKnown RBP12.2□□□□□ -0.46
COL6A3-209ENST00000472056 LCORQ96JN0 433 aaPredicted RBP12.2□□□□□ -0.46
COL6A3-209ENST00000472056 FGF20Q9NP95 211 aaPredicted RBP12.2□□□□□ -0.46
COL6A3-209ENST00000472056 HS3ST2Q9Y278 367 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 OR8G2PQ6IF36 304 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 ANGPTL5Q86XS5 388 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 TMEM229BQ8NBD8 167 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 ATG101Q9BSB4 218 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 RGPD3A6NKT7 1758 aaPredicted RBP12.2□□□□□ -0.46
COL6A3-209ENST00000472056 RGPD4Q7Z3J3 1758 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 UBE2IP63279 158 aaKnown RBP12.2□□□□□ -0.46
COL6A3-209ENST00000472056 TBC1D28Q2M2D7 210 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 BTNL3Q6UXE8 466 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 LRRTM1Q86UE6 522 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 C2CD4CQ8TF44 421 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 PPP1R1CQ8WVI7 109 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 HGDQ93099 445 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 TMEM218A2RU14 115 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 DEGS1O15121 323 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 MCATQ8IVS2 390 aaKnown RBP12.2□□□□□ -0.46
COL6A3-209ENST00000472056 ZIC5Q96T25 663 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 RHOFQ9HBH0 211 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 RBPJLQ9UBG7 517 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 LIPCP11150 499 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 ARNTP27540 789 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 FAM171A2A8MVW0 826 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 RBP2P50120 134 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 SPCS3P61009 180 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 DLK1P80370 383 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 ELOBQ15370 118 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 HSF5Q4G112 596 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-209ENST00000472056 VWA2Q5GFL6 755 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 C11orf87Q6NUJ2 197 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 BOD1Q96IK1 185 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 MRPL22Q9NWU5 206 aaKnown RBP12.19□□□□□ -0.46
COL6A3-209ENST00000472056 KLF8O95600 359 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-209ENST00000472056 SFTA3P0C7M3 94 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 NAT1P18440 290 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 TCTAP57738 103 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 H1FNTQ75WM6 255 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-209ENST00000472056 FAM71CQ8NEG0 241 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 OR5M11Q96RB7 305 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 PDLIM7Q9NR12 457 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 FKBP11Q9NYL4 201 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 OR6C76A6NM76 312 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 NTF3P20783 257 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 SDHAP31040 664 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 EXT1Q16394 746 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 HSD17B13Q7Z5P4 300 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-209ENST00000472056 VRK2Q86Y07 508 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 METTL27Q8N6F8 245 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-209ENST00000472056 THAP3Q8WTV1 239 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-209ENST00000472056 PCDHGA9Q9Y5G4 932 aaKnown RBP12.19□□□□□ -0.46
COL6A3-209ENST00000472056 NME2P1O60361 137 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 PKIAP61925 76 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 IL10RAQ13651 578 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 Q3ZCU0 254 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 ETFRF1Q6IPR1 90 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 GLDNQ6ZMI3 551 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-209ENST00000472056 GABRG1Q8N1C3 465 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 NEIL1Q96FI4 390 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-209ENST00000472056 PARD6AQ9NPB6 346 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 CYSLTR2Q9NS75 346 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 FOXJ3Q9UPW0 622 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 FAM74A7A6NL05 159 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 F3P13726 295 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 TNFRSF4P43489 277 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 GPR12P47775 334 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 SOWAHCQ53LP3 525 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-209ENST00000472056 SLCO4A1Q96BD0 722 aa12.19□□□□□ -0.46
COL6A3-209ENST00000472056 PDXPQ96GD0 296 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms