RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 RSPO3Q9BXY4 272 aaPredicted RBP10.47□□□□□ -0.73
NPHP4-204ENST00000460696 ZNF442Q9H7R0 627 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 SLC7A11Q9UPY5 501 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 KIF26BQ2KJY2 2108 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 GBF1Q92538 1859 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 EPG5Q9HCE0 2579 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 TRAV8-7A0A075B6U6 113 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 KLF4O43474 513 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 PMP2P02689 132 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 HOXB5P09067 269 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 QDPRP09417 244 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 CDAP32320 146 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 ARSKQ6UWY0 536 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 ZNF687Q8N1G0 1237 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 OR1J4Q8NGS1 313 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 POFUT1Q9H488 388 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 GLTPQ9NZD2 209 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 MBD2Q9UBB5 411 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 PTPN13Q12923 2485 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 PCP4L1A6NKN8 68 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 XRCC3O43542 346 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 S100A11P31949 105 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 GLP1RP43220 463 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 STARD6P59095 220 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 GPR85P60893 370 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 HERV-K104P61576 105 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 STPG1Q5TH74 334 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 TMEM71Q6P5X7 295 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 ST8SIA1Q92185 356 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 GSX2Q9BZM3 304 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 FOXJ3Q9UPW0 622 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 KLHDC2Q9Y2U9 406 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 SPG11Q96JI7 2443 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 APOC1P02654 83 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 HPXP02790 462 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 PDGFAP04085 211 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 ACHEP22303 614 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 BLVRBP30043 206 aaPredicted RBP10.46□□□□□ -0.73
NPHP4-204ENST00000460696 GSG1Q2KHT4 349 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 PDSS1Q5T2R2 415 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 PIGTQ969N2 578 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 PGLYRP3Q96LB9 341 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 LDAHQ9H6V9 325 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 SLC5A6Q9Y289 635 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 KCNIP3Q9Y2W7 256 aa10.46□□□□□ -0.73
NPHP4-204ENST00000460696 IGHV3-15A0A0B4J1V0 119 aa10.46□□□□□ -0.74
NPHP4-204ENST00000460696 SLC17A2O00624 439 aa10.46□□□□□ -0.74
NPHP4-204ENST00000460696 LPLP06858 475 aa10.46□□□□□ -0.74
NPHP4-204ENST00000460696 ADRB1P08588 477 aa10.46□□□□□ -0.74
NPHP4-204ENST00000460696 TMIGD3P0DMS9 266 aaPredicted RBP10.46□□□□□ -0.74
NPHP4-204ENST00000460696 FCGR2AP12318 317 aa10.46□□□□□ -0.74
NPHP4-204ENST00000460696 RPS4Y1P22090 263 aaKnown RBP10.46□□□□□ -0.74
NPHP4-204ENST00000460696 S100GP29377 79 aa10.46□□□□□ -0.74
NPHP4-204ENST00000460696 CCL7P80098 99 aa10.46□□□□□ -0.74
NPHP4-204ENST00000460696 EXOSC2Q13868 293 aaKnown RBP10.46□□□□□ -0.74
NPHP4-204ENST00000460696 NLRC3Q7RTR2 1065 aa10.46□□□□□ -0.74
NPHP4-204ENST00000460696 OR4S1Q8NGB4 309 aa10.46□□□□□ -0.74
NPHP4-204ENST00000460696 OR10G3Q8NGC4 313 aa10.46□□□□□ -0.74
NPHP4-204ENST00000460696 BORCS8Q96FH0 119 aa10.46□□□□□ -0.74
NPHP4-204ENST00000460696 PRRX2Q99811 253 aa10.46□□□□□ -0.74
NPHP4-204ENST00000460696 R4GMQ9 66 aa10.46□□□□□ -0.74
NPHP4-204ENST00000460696 PLXND1Q9Y4D7 1925 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 SLC22A23A1A5C7 686 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 SCGNO76038 276 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 MAP2K6P52564 334 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 EIF5AP63241 154 aaKnown RBP10.45□□□□□ -0.74
NPHP4-204ENST00000460696 IFITM2Q01629 132 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 EIF5AL1Q6IS14 154 aaKnown RBP10.45□□□□□ -0.74
NPHP4-204ENST00000460696 RPS19BP1Q86WX3 136 aaKnown RBP10.45□□□□□ -0.74
NPHP4-204ENST00000460696 OR10K1Q8NGX5 313 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 C11orf40Q8WZ69 217 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 KISS1RQ969F8 398 aaPredicted RBP10.45□□□□□ -0.74
NPHP4-204ENST00000460696 EHFQ9NZC4 300 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 RAB22AQ9UL26 194 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 B3GALT5Q9Y2C3 310 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 TMEM184BQ9Y519 407 aaPredicted RBP10.45□□□□□ -0.74
NPHP4-204ENST00000460696 OR6C76A6NM76 312 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 TGFBR3LH3BV60 316 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 SNAPC5O75971 98 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 STK17BO94768 372 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 GLSO94925 669 aaPredicted RBP10.45□□□□□ -0.74
NPHP4-204ENST00000460696 EPHA4P54764 986 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 SLC35A1P78382 337 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 C17orf107Q6ZR85 190 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 RAB11FIP2Q7L804 512 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 GTPBP8Q8N3Z3 284 aaPredicted RBP10.45□□□□□ -0.74
NPHP4-204ENST00000460696 CADM4Q8NFZ8 388 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 CPNE2Q96FN4 548 aaPredicted RBP10.45□□□□□ -0.74
NPHP4-204ENST00000460696 GPR84Q9NQS5 396 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 B3GNT2Q9NY97 397 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 LUZP4Q9P127 313 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 A0A1B0GUH1 482 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 OR4C45A6NMZ5 311 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 KLK10O43240 276 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 RBMXL2O75526 392 aaKnown RBP10.45□□□□□ -0.74
NPHP4-204ENST00000460696 POU3F3P20264 500 aaPredicted RBP10.45□□□□□ -0.74
NPHP4-204ENST00000460696 GDF1P27539 372 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 SSR4P51571 173 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 C9orf40Q8IXQ3 194 aa10.45□□□□□ -0.74
NPHP4-204ENST00000460696 NKAIN3Q8N8D7 197 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms