RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 ALG11Q2TAA5 492 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 PDZD11Q5EBL8 140 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 CDCP2Q5VXM1 449 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 IL34Q6ZMJ4 242 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 Q6ZRG5 221 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 ZNF615Q8N8J6 731 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 ASB5Q8WWX0 329 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 ARL5BQ96KC2 179 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 OR2A5Q96R48 311 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 SERINC2Q96SA4 455 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 NUDT9Q9BW91 350 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 COLEC10Q9Y6Z7 277 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 A0A1W2PP55 124 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 LILRB3O75022 631 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 APBB3O95704 486 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 GPR75O95800 540 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 CD2P06729 351 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 DRD3P35462 400 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 ENPP2Q13822 863 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 DEFB110Q30KQ9 67 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 UNQ6494/PRO21346Q6UXR6 183 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 NPSR1Q6W5P4 371 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 C15orf54Q8N8G6 183 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 RNF128Q8TEB7 428 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 STACQ99469 402 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 EDDM13A0A1B0GTR0 161 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 RDH16O75452 317 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 TIMP1P01033 207 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 IL2RAP01589 272 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 CEACAM5P06731 702 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 HOXB5P09067 269 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 FOLR2P14207 255 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 RPS4XP62701 263 aaKnown RBP10.5□□□□□ -0.73
CPSF3-202ENST00000460593 PLPP4Q5VZY2 271 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 LILRA6Q6PI73 481 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 ZNF561Q8N587 486 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 PNLDC1Q8NA58 520 aaKnown RBP10.5□□□□□ -0.73
CPSF3-202ENST00000460593 TMEM104Q8NE00 496 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 MARS2Q96GW9 593 aaKnown RBP10.5□□□□□ -0.73
CPSF3-202ENST00000460593 JSRP1Q96MG2 331 aaPredicted RBP10.5□□□□□ -0.73
CPSF3-202ENST00000460593 SPACA1Q9HBV2 294 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 PILRAQ9UKJ1 303 aa10.5□□□□□ -0.73
CPSF3-202ENST00000460593 ASCC3Q8N3C0 2202 aaKnown RBP10.49□□□□□ -0.73
CPSF3-202ENST00000460593 NKX2-2O95096 273 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 FCGR3AP08637 254 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 FBP1P09467 338 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 RAB5AP20339 215 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 LAP3P28838 519 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 EIF2S3P41091 472 aaKnown RBP10.49□□□□□ -0.73
CPSF3-202ENST00000460593 CD226Q15762 336 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 ZNF74Q16587 644 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 ADGRE4PQ86SQ3 457 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 ADAMTS17Q8TE56 1095 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 MAFIPQ8WZ33 124 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 PRRT1Q99946 306 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 NICN1Q9BSH3 213 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 TAF9BQ9HBM6 251 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 SLC5A6Q9Y289 635 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 FAM157AC9JC47 383 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 SLC31A1O15431 190 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 C1QL1O75973 258 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 IGHV2-5P01817 119 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 IFNA6P05013 189 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 SFTPBP07988 381 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 MAOAP21397 527 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 TACR3P29371 465 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 DNASE1L1P49184 302 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 EGR4Q05215 589 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 RASGEF1BQ0VAM2 473 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 PYY3Q5JQD4 70 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 SLC25A36Q96CQ1 311 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 SRMSQ9H3Y6 488 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 METTL1Q9UBP6 276 aaKnown RBP10.49□□□□□ -0.73
CPSF3-202ENST00000460593 EMC9Q9Y3B6 208 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 CXorf65A6NEN9 183 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 H0YGG7 62 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 EIF1AYO14602 144 aaKnown RBP10.49□□□□□ -0.73
CPSF3-202ENST00000460593 GPR37O15354 613 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 PPIHO43447 177 aaKnown RBP10.49□□□□□ -0.73
CPSF3-202ENST00000460593 CD5P06127 495 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 GSK3AP49840 483 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 PRPS1P60891 318 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 ARF3P61204 181 aaPredicted RBP10.49□□□□□ -0.73
CPSF3-202ENST00000460593 SLC17A1Q14916 467 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 ANKRD55Q3KP44 614 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 FAM78AQ5JUQ0 283 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 ZNF383Q8NA42 475 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 LRRC75AQ8NAA5 344 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 OR13C3Q8NGS6 347 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 OR13C9Q8NGT0 318 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 HHIPL1Q96JK4 782 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 METTL8Q9H825 291 aaKnown RBP10.49□□□□□ -0.73
CPSF3-202ENST00000460593 FGF22Q9HCT0 170 aa10.49□□□□□ -0.73
CPSF3-202ENST00000460593 REV3LO60673 3130 aa10.48□□□□□ -0.73
CPSF3-202ENST00000460593 TGFBR3LH3BV60 316 aa10.48□□□□□ -0.73
CPSF3-202ENST00000460593 RAB27BO00194 218 aa10.48□□□□□ -0.73
CPSF3-202ENST00000460593 CYR61O00622 381 aa10.48□□□□□ -0.73
CPSF3-202ENST00000460593 DUS4LO95620 317 aaKnown RBP10.48□□□□□ -0.73
CPSF3-202ENST00000460593 FOSL1P15407 271 aa10.48□□□□□ -0.73
CPSF3-202ENST00000460593 PPP1CAP62136 330 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms