RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	ABHD4	Q8TB40	342 aa		9.22	□□□□□ -0.93
UBR4-208	ENST00000459947	DOK1	Q99704	481 aa		9.22	□□□□□ -0.93
UBR4-208	ENST00000459947	COPS4	Q9BT78	406 aa		9.22	□□□□□ -0.93
UBR4-208	ENST00000459947	RGCC	Q9H4X1	137 aa		9.22	□□□□□ -0.93
UBR4-208	ENST00000459947	SMPD3	Q9NY59	655 aa	Predicted RBP	9.22	□□□□□ -0.93
UBR4-208	ENST00000459947	ZNF670-ZNF695	F2Z2N8	137 aa		9.22	□□□□□ -0.93
UBR4-208	ENST00000459947	DCTD	P32321	178 aa		9.22	□□□□□ -0.93
UBR4-208	ENST00000459947	APOF	Q13790	326 aa		9.22	□□□□□ -0.93
UBR4-208	ENST00000459947	EIF2B1	Q14232	305 aa	Known RBP	9.22	□□□□□ -0.93
UBR4-208	ENST00000459947	RCN1	Q15293	331 aa		9.22	□□□□□ -0.93
UBR4-208	ENST00000459947	NKPD1	Q17RQ9	610 aa		9.22	□□□□□ -0.93
UBR4-208	ENST00000459947	VHLL	Q6RSH7	139 aa		9.22	□□□□□ -0.93
UBR4-208	ENST00000459947	LSR	Q86X29	649 aa	Predicted RBP	9.22	□□□□□ -0.93
UBR4-208	ENST00000459947	HIST2H2AB	Q8IUE6	130 aa	Predicted RBP	9.22	□□□□□ -0.93
UBR4-208	ENST00000459947	HAVCR2	Q8TDQ0	301 aa		9.22	□□□□□ -0.93
UBR4-208	ENST00000459947	NEUROG1	Q92886	237 aa		9.22	□□□□□ -0.93
UBR4-208	ENST00000459947	GMPPB	Q9Y5P6	360 aa		9.22	□□□□□ -0.93
UBR4-208	ENST00000459947	CACNA1D	Q01668	2161 aa		9.21	□□□□□ -0.93
UBR4-208	ENST00000459947	PLSCR5	A0PG75	271 aa		9.21	□□□□□ -0.93
UBR4-208	ENST00000459947	LYN	P07948	512 aa		9.21	□□□□□ -0.93
UBR4-208	ENST00000459947	SOD3	P08294	240 aa		9.21	□□□□□ -0.93
UBR4-208	ENST00000459947	ADH4	P08319	380 aa		9.21	□□□□□ -0.93
UBR4-208	ENST00000459947	CCNO	P22674	350 aa		9.21	□□□□□ -0.93
UBR4-208	ENST00000459947	SLC2A5	P22732	501 aa		9.21	□□□□□ -0.93
UBR4-208	ENST00000459947	HSD11B1	P28845	292 aa		9.21	□□□□□ -0.93
UBR4-208	ENST00000459947	PDLIM4	P50479	330 aa		9.21	□□□□□ -0.93
UBR4-208	ENST00000459947	ACTC1	P68032	377 aa		9.21	□□□□□ -0.93
UBR4-208	ENST00000459947	ACTA1	P68133	377 aa		9.21	□□□□□ -0.93
UBR4-208	ENST00000459947	OCLN	Q16625	522 aa		9.21	□□□□□ -0.93
UBR4-208	ENST00000459947	TMEM154	Q6P9G4	183 aa		9.21	□□□□□ -0.93
UBR4-208	ENST00000459947	TCEANC	Q8N8B7	351 aa		9.21	□□□□□ -0.93
UBR4-208	ENST00000459947	ZNF540	Q8NDQ6	660 aa		9.21	□□□□□ -0.93
UBR4-208	ENST00000459947	CCDC54	Q8NEL0	328 aa		9.21	□□□□□ -0.93
UBR4-208	ENST00000459947	SLAMF6	Q96DU3	332 aa		9.21	□□□□□ -0.93
UBR4-208	ENST00000459947	EGLN1	Q9GZT9	426 aa		9.21	□□□□□ -0.93
UBR4-208	ENST00000459947	HSPE1-MOB4	S4R3N1	261 aa		9.21	□□□□□ -0.93
UBR4-208	ENST00000459947		H0YJX3	145 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	CASQ2	O14958	399 aa	Predicted RBP	9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	MITF	O75030	526 aa	Predicted RBP	9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	SLC25A16	P16260	332 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	TRIP10	Q15642	601 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	CLEC2A	Q6UVW9	174 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	FBXW12	Q6X9E4	464 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	TIGD4	Q8IY51	512 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	OTOS	Q8NHW6	89 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	RNF133	Q8WVZ7	376 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	C1QTNF5	Q9BXJ0	243 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	HEATR1	Q9H583	2144 aa	Known RBP	9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	MOB1A	Q9H8S9	216 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	ZDHHC8	Q9ULC8	765 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	DSCAM	O60469	2012 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	LOC100509620	A0A075B734	347 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	TVP23A	A6NH52	213 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947		M0R135	149 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	SCG5	P05408	212 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	H2BFM	P0C1H6	154 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	KITLG	P21583	273 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	HTR1F	P30939	366 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	TESK1	Q15569	626 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	ZNF771	Q7L3S4	317 aa	Predicted RBP	9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	DCXR	Q7Z4W1	244 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	TGIF2LY	Q8IUE0	185 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	OR52H1	Q8NGJ2	320 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	ZNF799	Q96GE5	643 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	CLN6	Q9NWW5	311 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	LAMP5	Q9UJQ1	280 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	ITGB1BP2	Q9UKP3	347 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	GRIP1	Q9Y3R0	1128 aa		9.21	□□□□□ -0.94
UBR4-208	ENST00000459947	RER1	O15258	196 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	SLC16A6	O15403	523 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	TLX2	O43763	284 aa	Predicted RBP	9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	CD8A	P01732	235 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	DDOST	P39656	456 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	SLC3A1	Q07837	685 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	ZNF829	Q3KNS6	432 aa	Predicted RBP	9.2	□□□□□ -0.94
UBR4-208	ENST00000459947		Q5PR19	223 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	AADACL4	Q5VUY2	407 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	MYPOP	Q86VE0	399 aa	Predicted RBP	9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	KLB	Q86Z14	1044 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	FAM81A	Q8TBF8	368 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	TEAD3	Q99594	435 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	MPZL1	O95297	269 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	F12	P00748	615 aa	Predicted RBP	9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	FAM157B	P0CG42	384 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	OTX1	P32242	354 aa	Predicted RBP	9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	LPCAT4	Q643R3	524 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	COLCA1	Q6ZS62	124 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	ZNF511	Q8NB15	262 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	SLC25A40	Q8TBP6	338 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	MARS2	Q96GW9	593 aa	Known RBP	9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	OR10A2	Q9H208	303 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	TAAR3P	Q9P1P4	343 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	ACSM4	P0C7M7	580 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	ATP6V1B1	P15313	513 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	EFNB1	P98172	346 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	MRPL28	Q13084	256 aa	Known RBP	9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	MED21	Q13503	144 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	MEP1B	Q16820	701 aa		9.2	□□□□□ -0.94
UBR4-208	ENST00000459947	LINC00346	Q8IVM7	164 aa		9.2	□□□□□ -0.94

Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms