RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 FLYWCH2Q96CP2 140 aaKnown RBP4.77□□□□□ -1.65
VPS41-209ENST00000457055 RAB39BQ96DA2 213 aa4.77□□□□□ -1.65
VPS41-209ENST00000457055 PELI1Q96FA3 418 aa4.77□□□□□ -1.65
VPS41-209ENST00000457055 CENPNQ96H22 339 aaPredicted RBP4.77□□□□□ -1.65
VPS41-209ENST00000457055 TMEM19Q96HH6 336 aa4.77□□□□□ -1.65
VPS41-209ENST00000457055 CXorf58Q96LI9 332 aa4.77□□□□□ -1.65
VPS41-209ENST00000457055 DDOQ99489 341 aa4.77□□□□□ -1.65
VPS41-209ENST00000457055 FMO2Q99518 471 aa4.77□□□□□ -1.65
VPS41-209ENST00000457055 CDCA4Q9BXL8 241 aa4.77□□□□□ -1.65
VPS41-209ENST00000457055 CADM1Q9BY67 442 aaKnown RBP4.77□□□□□ -1.65
VPS41-209ENST00000457055 LHPPQ9H008 270 aa4.77□□□□□ -1.65
VPS41-209ENST00000457055 SHARPINQ9H0F6 387 aa4.77□□□□□ -1.65
VPS41-209ENST00000457055 TXNIPQ9H3M7 391 aa4.77□□□□□ -1.65
VPS41-209ENST00000457055 REEP4Q9H6H4 257 aa4.77□□□□□ -1.65
VPS41-209ENST00000457055 INPP5EQ9NRR6 644 aa4.77□□□□□ -1.65
VPS41-209ENST00000457055 SPANXB1Q9NS25 103 aaPredicted RBP4.77□□□□□ -1.65
VPS41-209ENST00000457055 ZNF224Q9NZL3 707 aa4.77□□□□□ -1.65
VPS41-209ENST00000457055 GNG12Q9UBI6 72 aa4.77□□□□□ -1.65
VPS41-209ENST00000457055 PSORS1C1Q9UIG5 152 aa4.77□□□□□ -1.65
VPS41-209ENST00000457055 SCP2D1Q9UJQ7 156 aa4.77□□□□□ -1.65
VPS41-209ENST00000457055 STUB1Q9UNE7 303 aa4.77□□□□□ -1.65
VPS41-209ENST00000457055 RNF115Q9Y4L5 304 aa4.77□□□□□ -1.65
VPS41-209ENST00000457055 HSPE1-MOB4S4R3N1 261 aa4.77□□□□□ -1.65
VPS41-209ENST00000457055 LAMB2P55268 1798 aa4.77□□□□□ -1.65
VPS41-209ENST00000457055 UBR2Q8IWV8 1755 aa4.77□□□□□ -1.65
VPS41-209ENST00000457055 A0A0G2JMP0 313 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 KIR2DL5BA0A0G2JN68 375 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 KIR2DL5BA0A0G2JPC4 375 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 A0A1W2PS29 197 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 FEZF1A0PJY2 475 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 IGSF23A1L1A6 192 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 PRORSD1PA6NEY8 169 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 IGLON5A6NGN9 336 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 HSPB2A8KAH6 182 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 M0R143 59 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 PLPP3O14495 311 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 CTSVO60911 334 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 ENTPD6O75354 484 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 GPR75O95800 540 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 IFNA1P01562 189 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 JCHAINP01591 159 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 GAPDHP04406 335 aaKnown RBP4.76□□□□□ -1.65
VPS41-209ENST00000457055 GIPP09681 153 aaPredicted RBP4.76□□□□□ -1.65
VPS41-209ENST00000457055 CCL5P13501 91 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 PAX1P15863 534 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 UGT2B7P16662 529 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 PRPH2P23942 346 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 RPS12P25398 132 aaKnown RBP4.76□□□□□ -1.65
VPS41-209ENST00000457055 HTR1FP30939 366 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 ARRB2P32121 409 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 CCKARP32238 428 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 NR4A2P43354 598 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 NR0B1P51843 470 aaKnown RBP4.76□□□□□ -1.65
VPS41-209ENST00000457055 FUT6P51993 359 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 RAB25P57735 213 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 RRAS2P62070 204 aaPredicted RBP4.76□□□□□ -1.65
VPS41-209ENST00000457055 MRPS34P82930 218 aaKnown RBP4.76□□□□□ -1.65
VPS41-209ENST00000457055 PAX2Q02962 417 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 EMX1Q04741 257 aaPredicted RBP4.76□□□□□ -1.65
VPS41-209ENST00000457055 ELAVL2Q12926 359 aaKnown RBP4.76□□□□□ -1.65
VPS41-209ENST00000457055 TMEM132DQ14C87 1099 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 HSPB2Q16082 182 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 TAF9Q16594 264 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 PLPPR5Q32ZL2 321 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 ELFN2Q5R3F8 820 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 FAM78BQ5VT40 261 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 RSBN1Q5VWQ0 802 aaPredicted RBP4.76□□□□□ -1.65
VPS41-209ENST00000457055 WDR25Q64LD2 544 aaPredicted RBP4.76□□□□□ -1.65
VPS41-209ENST00000457055 NIT1Q86X76 327 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 TDHQ8IZJ6 230 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 KIR2DL5AQ8N109 375 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 MUC20Q8N307 709 aaPredicted RBP4.76□□□□□ -1.65
VPS41-209ENST00000457055 CLIP4Q8N3C7 705 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 SMIM20Q8N5G0 67 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 ATPAF2Q8N5M1 289 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 OR4M2Q8NGB6 313 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 OR4P4Q8NGL7 312 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 KIR2DL5BQ8NHK3 375 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 RAB8BQ92930 207 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 WBP2Q969T9 261 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 CMTM7Q96FZ5 175 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 ZBTB45Q96K62 511 aaPredicted RBP4.76□□□□□ -1.65
VPS41-209ENST00000457055 ZNF354BQ96LW1 612 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 ZNF582Q96NG8 517 aaPredicted RBP4.76□□□□□ -1.65
VPS41-209ENST00000457055 HDHD5Q9BXW7 423 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 UGT2B28Q9BY64 529 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 TMEM39BQ9GZU3 492 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 BPIFA1Q9NP55 256 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 SLC22A11Q9NSA0 550 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 GPATCH2LQ9NWQ4 482 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 KLRF1Q9NZS2 232 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 FAM30AQ9NZY2 134 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 RNF7Q9UBF6 113 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 DHCR7Q9UBM7 475 aaKnown RBP4.76□□□□□ -1.65
VPS41-209ENST00000457055 SLC9A2Q9UBY0 812 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 PURGQ9UJV8 347 aaKnown RBP4.76□□□□□ -1.65
VPS41-209ENST00000457055 VPREB3Q9UKI3 123 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 RALYQ9UKM9 306 aaKnown RBP4.76□□□□□ -1.65
VPS41-209ENST00000457055 NEU3Q9UQ49 428 aa4.76□□□□□ -1.65
VPS41-209ENST00000457055 SLC35A3Q9Y2D2 325 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms