RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 ERI1Q8IV48 349 aaKnown RBP3.35□□□□□ -1.87
VPS29-202ENST00000447578 MSRB3Q8IXL7 192 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 RNF175Q8N4F7 328 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 Q8N9G6 341 aaPredicted RBP3.35□□□□□ -1.87
VPS29-202ENST00000447578 ZNF555Q8NEP9 628 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 OR9K2Q8NGE7 335 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 OR2A12Q8NGT7 310 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 OR5K1Q8NHB7 308 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 CDC26Q8NHZ8 85 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 ZNF671Q8TAW3 534 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 M1APQ8TC57 530 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 MCOLN3Q8TDD5 553 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 TCEAL4Q96EI5 215 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 PELI1Q96FA3 418 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 CMTM7Q96FZ5 175 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 MED8Q96G25 268 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 AURKBQ96GD4 344 aaPredicted RBP3.35□□□□□ -1.87
VPS29-202ENST00000447578 ITCHQ96J02 903 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 C12orf66Q96MD2 445 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 CCDC115Q96NT0 180 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 MCCC1Q96RQ3 725 aaPredicted RBP3.35□□□□□ -1.87
VPS29-202ENST00000447578 SLC6A7Q99884 636 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 P2RY13Q9BPV8 354 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 ING2Q9H160 280 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 NXF5Q9H1B4 397 aaKnown RBP3.35□□□□□ -1.87
VPS29-202ENST00000447578 ADNPQ9H2P0 1102 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 LINC00597Q9H2U6 94 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 PARLQ9H300 379 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 IKZF5Q9H5V7 419 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 NTN4Q9HB63 628 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 UFSP2Q9NUQ7 469 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 SLC25A37Q9NYZ2 338 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 THAP10Q9P2Z0 257 aaPredicted RBP3.35□□□□□ -1.87
VPS29-202ENST00000447578 CACNG5Q9UF02 275 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 ZNF639Q9UID6 485 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 ERVW-1Q9UQF0 538 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 CCL26Q9Y258 94 aa3.35□□□□□ -1.87
VPS29-202ENST00000447578 CAB39Q9Y376 341 aaPredicted RBP3.35□□□□□ -1.87
VPS29-202ENST00000447578 MYO18AQ92614 2054 aaKnown RBP3.34□□□□□ -1.87
VPS29-202ENST00000447578 COL4A6Q14031 1691 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 IGHV4-30-2A0A087WSY4 118 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 A0A087X002 238 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 CXorf51AA0A1B0GTR3 108 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 OR6C65A6NJZ3 312 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 EVPLLA8MZ36 301 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 E7EQ34 232 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 GFYI3L273 518 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 K7EQG2 157 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 FOXE1O00358 373 aaPredicted RBP3.34□□□□□ -1.87
VPS29-202ENST00000447578 SH3BGRLO75368 114 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 TRIM3O75382 744 aaPredicted RBP3.34□□□□□ -1.87
VPS29-202ENST00000447578 MYO1DO94832 1006 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 CPSF4O95639 269 aaKnown RBP3.34□□□□□ -1.87
VPS29-202ENST00000447578 ZNF682O95780 498 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 F10P00742 488 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 TIMP1P01033 207 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 IGHG1P01857 330 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 CATP04040 527 aaKnown RBP3.34□□□□□ -1.87
VPS29-202ENST00000447578 ALOX5P09917 674 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 ZNF30P17039 623 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 POLR2EP19388 210 aaKnown RBP3.34□□□□□ -1.87
VPS29-202ENST00000447578 POLR2IP36954 125 aaKnown RBP3.34□□□□□ -1.87
VPS29-202ENST00000447578 CCT3P49368 545 aaKnown RBP3.34□□□□□ -1.87
VPS29-202ENST00000447578 HLCSP50747 726 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 GZMMP51124 257 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 AP1S2P56377 157 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 PFN3P60673 137 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 HPCAP84074 193 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 PMS2P3Q13401 168 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 LPAL2Q16609 132 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 LRRC26Q2I0M4 334 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 SNAI3Q3KNW1 292 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 CCSMST1Q4G0I0 132 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 TMEM52BQ4KMG9 183 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 ACER2Q5QJU3 275 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 RBM48Q5RL73 367 aaKnown RBP3.34□□□□□ -1.87
VPS29-202ENST00000447578 DCST2Q5T1A1 773 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 PRAMEF5Q5TYX0 476 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 PRAMEF6Q5VXH4 476 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 TMEM215Q68D42 235 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 OR4F3Q6IEY1 312 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 OR8G2PQ6IF36 304 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 ANKRD26P1Q6NSI1 321 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 ACSM5Q6NUN0 579 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 NOXRED1Q6NXP6 359 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 ZNF773Q6PK81 442 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 AGTRAPQ6RW13 159 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 SPESP1Q6UW49 350 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 ZNF621Q6ZSS3 439 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 PRSS48Q7RTY5 328 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 NOTCH2NLQ7Z3S9 236 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 THOC6Q86W42 341 aaKnown RBP3.34□□□□□ -1.87
VPS29-202ENST00000447578 CALHM3Q86XJ0 350 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 GPR65Q8IYL9 337 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 CLECL1Q8IZS7 167 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 HS3ST5Q8IZT8 346 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 FAM9CQ8IZT9 166 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 C8orf59Q8N0T1 100 aaPredicted RBP3.34□□□□□ -1.87
VPS29-202ENST00000447578 C10orf111Q8N326 155 aa3.34□□□□□ -1.87
VPS29-202ENST00000447578 SVOPLQ8N434 492 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms