RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 CMBLQ96DG6 245 aa6.6□□□□□ -1.35
CD44-211ENST00000442151 HSH2DQ96JZ2 352 aa6.6□□□□□ -1.35
CD44-211ENST00000442151 GPX7Q96SL4 187 aaPredicted RBP6.6□□□□□ -1.35
CD44-211ENST00000442151 SLC22A4Q9H015 551 aa6.6□□□□□ -1.35
CD44-211ENST00000442151 HDHD2Q9H0R4 259 aa6.6□□□□□ -1.35
CD44-211ENST00000442151 GORASP2Q9H8Y8 452 aa6.6□□□□□ -1.35
CD44-211ENST00000442151 TRIM36Q9NQ86 728 aa6.6□□□□□ -1.35
CD44-211ENST00000442151 G6PC2Q9NQR9 355 aa6.6□□□□□ -1.35
CD44-211ENST00000442151 TMEM106BQ9NUM4 274 aa6.6□□□□□ -1.35
CD44-211ENST00000442151 ADA2Q9NZK5 511 aa6.6□□□□□ -1.35
CD44-211ENST00000442151 VSX1Q9NZR4 365 aaPredicted RBP6.6□□□□□ -1.35
CD44-211ENST00000442151 RHCGQ9UBD6 479 aa6.6□□□□□ -1.35
CD44-211ENST00000442151 IL20RAQ9UHF4 553 aa6.6□□□□□ -1.35
CD44-211ENST00000442151 MAGEL2Q9UJ55 1249 aa6.6□□□□□ -1.35
CD44-211ENST00000442151 PPP1R3CQ9UQK1 317 aa6.6□□□□□ -1.35
CD44-211ENST00000442151 MALRD1Q5VYJ5 2156 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 PTP4A3O75365 173 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 FSTL3O95633 263 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 TXNDC12O95881 172 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 ZNF823P16415 610 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 NOS3P29474 1203 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 MPV17P39210 176 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 MDH2P40926 338 aaKnown RBP6.59□□□□□ -1.35
CD44-211ENST00000442151 GPR4P46093 362 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 MTNR1AP48039 350 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 RAD23AP54725 363 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 HILS1P60008 231 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 ESCO2Q56NI9 601 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 SPATA46Q5T0L3 261 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 SMARCD3Q6STE5 483 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 BTNL3Q6UXE8 466 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 VTCN1Q7Z7D3 282 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 IGFN1Q86VF2 1251 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 LRRC28Q86X40 367 aaPredicted RBP6.59□□□□□ -1.35
CD44-211ENST00000442151 POU5F2Q8N7G0 328 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 ZNF283Q8N7M2 679 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 OR11L1Q8NGX0 322 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 GNPDA2Q8TDQ7 276 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 PYURFQ96I23 114 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 Q96M85 177 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 SP140LQ9H930 580 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 PATZ1Q9HBE1 687 aaKnown RBP6.59□□□□□ -1.35
CD44-211ENST00000442151 NRIP3Q9NQ35 241 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 DCAF13Q9NV06 445 aaKnown RBP6.59□□□□□ -1.35
CD44-211ENST00000442151 TMEM100Q9NV29 134 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 ARMCX1Q9P291 453 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 MIOXQ9UGB7 285 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 OR5V1Q9UGF6 321 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 LRCH1Q9Y2L9 728 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 POLR3KQ9Y2Y1 108 aaPredicted RBP6.59□□□□□ -1.35
CD44-211ENST00000442151 IER3IP1Q9Y5U9 82 aa6.59□□□□□ -1.35
CD44-211ENST00000442151 ATRQ13535 2644 aa6.59□□□□□ -1.36
CD44-211ENST00000442151 STAB1Q9NY15 2570 aa6.59□□□□□ -1.36
CD44-211ENST00000442151 SONP18583 2426 aaKnown RBP6.59□□□□□ -1.36
CD44-211ENST00000442151 ZANQ9Y493 2812 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 IGKV1D-43A0A0B4J1Z2 117 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 TMEM89A2RUT3 159 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 NME4O00746 187 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 DEAF1O75398 565 aaPredicted RBP6.58□□□□□ -1.36
CD44-211ENST00000442151 SASH3O75995 380 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 KRT36O76013 467 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 GADD45GO95257 159 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 RRM2P31350 389 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 COMPP49747 757 aaPredicted RBP6.58□□□□□ -1.36
CD44-211ENST00000442151 BPIFB3P59826 476 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 FOXL1Q12952 345 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 SNCBQ16143 134 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 ZNF181Q2M3W8 571 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 RFX4Q33E94 735 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 SAMD4BQ5PRF9 694 aaKnown RBP6.58□□□□□ -1.36
CD44-211ENST00000442151 LRRN1Q6UXK5 716 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 NLRC3Q7RTR2 1065 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 CPLX4Q7Z7G2 160 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 ZNF101Q8IZC7 436 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 CLDN22Q8N7P3 220 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 OR8G5Q8NG78 346 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 OR4C15Q8NGM1 316 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 FAM46AQ96IP4 442 aaKnown RBP6.58□□□□□ -1.36
CD44-211ENST00000442151 RSRC1Q96IZ7 334 aaKnown RBP6.58□□□□□ -1.36
CD44-211ENST00000442151 RERGLQ9H628 205 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 UBAP1Q9NZ09 502 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 KIF17Q9P2E2 1029 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 ABCD2Q9UBJ2 740 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 SIGLEC7Q9Y286 467 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 COA3Q9Y2R0 106 aaPredicted RBP6.58□□□□□ -1.36
CD44-211ENST00000442151 STARD10Q9Y365 291 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 AUP1Q9Y679 476 aa6.58□□□□□ -1.36
CD44-211ENST00000442151 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.58□□□□□ -1.36
CD44-211ENST00000442151 ZSCAN5BA6NJL1 495 aa6.57□□□□□ -1.36
CD44-211ENST00000442151 J3KTA2 159 aa6.57□□□□□ -1.36
CD44-211ENST00000442151 FFAR1O14842 300 aa6.57□□□□□ -1.36
CD44-211ENST00000442151 ARPC3O15145 178 aa6.57□□□□□ -1.36
CD44-211ENST00000442151 PRSS23O95084 383 aa6.57□□□□□ -1.36
CD44-211ENST00000442151 NGFP01138 241 aa6.57□□□□□ -1.36
CD44-211ENST00000442151 PPIAL4GP0DN37 164 aa6.57□□□□□ -1.36
CD44-211ENST00000442151 OMPP47874 163 aa6.57□□□□□ -1.36
CD44-211ENST00000442151 BLVRAP53004 296 aa6.57□□□□□ -1.36
CD44-211ENST00000442151 TPTEP56180 551 aa6.57□□□□□ -1.36
CD44-211ENST00000442151 BTG1P62324 171 aa6.57□□□□□ -1.36
CD44-211ENST00000442151 ARMCX4Q5H9R4 360 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms