RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-206	ENST00000441089	TIMP4	Q99727	224 aa		4.15	□□□□□ -1.75
PTPN4-206	ENST00000441089	APOL4	Q9BPW4	351 aa		4.15	□□□□□ -1.75
PTPN4-206	ENST00000441089	TMEM204	Q9BSN7	226 aa		4.15	□□□□□ -1.75
PTPN4-206	ENST00000441089	KATNB1	Q9BVA0	655 aa		4.15	□□□□□ -1.75
PTPN4-206	ENST00000441089	TAPBPL	Q9BX59	468 aa		4.15	□□□□□ -1.75
PTPN4-206	ENST00000441089	FN3K	Q9H479	309 aa		4.15	□□□□□ -1.75
PTPN4-206	ENST00000441089	MED20	Q9H944	212 aa		4.15	□□□□□ -1.75
PTPN4-206	ENST00000441089	FANCF	Q9NPI8	374 aa		4.15	□□□□□ -1.75
PTPN4-206	ENST00000441089	HINT3	Q9NQE9	182 aa	Known RBP	4.15	□□□□□ -1.75
PTPN4-206	ENST00000441089	CMC2	Q9NRP2	79 aa		4.15	□□□□□ -1.75
PTPN4-206	ENST00000441089	INIP	Q9NRY2	104 aa		4.15	□□□□□ -1.75
PTPN4-206	ENST00000441089	FAIM	Q9NVQ4	179 aa		4.15	□□□□□ -1.75
PTPN4-206	ENST00000441089	PAK1IP1	Q9NWT1	392 aa	Predicted RBP	4.15	□□□□□ -1.75
PTPN4-206	ENST00000441089	MRPL39	Q9NYK5	338 aa	Known RBP	4.15	□□□□□ -1.75
PTPN4-206	ENST00000441089	DNAJC27	Q9NZQ0	273 aa		4.15	□□□□□ -1.75
PTPN4-206	ENST00000441089	KLHL13	Q9P2N7	655 aa		4.15	□□□□□ -1.75
PTPN4-206	ENST00000441089	ENOPH1	Q9UHY7	261 aa		4.15	□□□□□ -1.75
PTPN4-206	ENST00000441089	ZNF346	Q9UL40	294 aa	Known RBP	4.15	□□□□□ -1.75
PTPN4-206	ENST00000441089	TRAPPC4	Q9Y296	219 aa		4.15	□□□□□ -1.75
PTPN4-206	ENST00000441089	DMRT1	Q9Y5R6	373 aa		4.15	□□□□□ -1.75
PTPN4-206	ENST00000441089	HSPE1-MOB4	S4R3N1	261 aa		4.15	□□□□□ -1.75
PTPN4-206	ENST00000441089	IGKV1D-43	A0A0B4J1Z2	117 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	OR6C68	A6NDL8	312 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	GJE1	A6NN92	205 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	ZNF716	A6NP11	495 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089		H7C1C5	153 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	DCTN6	O00399	190 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	RNF13	O43567	381 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	NDUFS7	O75251	213 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	SERPINI2	O75830	405 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	AQP8	O94778	261 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	TGFA	P01135	160 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	HIST1H2AB	P04908	130 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	HMGN1	P05114	100 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	CRH	P06850	196 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	LYN	P07948	512 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	SOD3	P08294	240 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	HTR1A	P08908	422 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	APEH	P13798	732 aa	Known RBP	4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	PCMT1	P22061	227 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	SLC2A5	P22732	501 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	AHCY	P23526	432 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	CRHBP	P24387	322 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	EDNRA	P25101	427 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	FKBP2	P26885	142 aa	Known RBP	4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	GTF2E2	P29084	291 aa	Known RBP	4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	RPL4	P36578	427 aa	Known RBP	4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	SLC15A1	P46059	708 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	RPS6KA3	P51812	740 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	CHN2	P52757	468 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	CDH15	P55291	814 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	CARD18	P57730	90 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	CDC42	P60953	191 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	RPL27	P61353	136 aa	Known RBP	4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	LCN6	P62502	163 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	POU3F1	Q03052	451 aa	Predicted RBP	4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	ZNF91	Q05481	1191 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	PUDP	Q08623	228 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	ITGAD	Q13349	1161 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	KRR1	Q13601	381 aa	Known RBP	4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	SLC17A1	Q14916	467 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	MFSD13A	Q14CX5	517 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	SNAPC1	Q16533	368 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	BCL2A1	Q16548	175 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	ANKDD1A	Q495B1	522 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	VAX1	Q5SQQ9	334 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	SLC25A30	Q5SVS4	291 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	KRT80	Q6KB66	452 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	PLBD1	Q6P4A8	553 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	PAQR6	Q6TCH4	344 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	B3GLCT	Q6Y288	498 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	USP43	Q70EL4	1123 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	HIST3H2A	Q7L7L0	130 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	PEG10	Q86TG7	708 aa	Known RBP	4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	CPO	Q8IVL8	374 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	BCL6B	Q8N143	479 aa	Predicted RBP	4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	SLC43A2	Q8N370	569 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	ZNF786	Q8N393	782 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	ZIC4	Q8N9L1	334 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	C9orf106	Q8NAJ2	232 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	SDR9C7	Q8NEX9	313 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	BPIFB6	Q8NFQ5	453 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	OR52E2	Q8NGJ4	325 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	OR8J1	Q8NGP2	316 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	OR9Q1	Q8NGQ5	310 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	ASB10	Q8WXI3	467 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	HDAC2	Q92769	488 aa	Known RBP	4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	GGH	Q92820	318 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	HIST1H2AC	Q93077	130 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	ZNF566	Q969W8	418 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	INTS12	Q96CB8	462 aa	Known RBP	4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	NMD3	Q96D46	503 aa	Known RBP	4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	MSI2	Q96DH6	328 aa	Known RBP	4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	LRR1	Q96L50	414 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	TSSK2	Q96PF2	358 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	ZNF385A	Q96PM9	386 aa	Known RBP	4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	NR1H4	Q96RI1	486 aa	Predicted RBP	4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	SIGLEC11	Q96RL6	698 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	NMNAT3	Q96T66	252 aa		4.14	□□□□□ -1.75
PTPN4-206	ENST00000441089	TUBA1C	Q9BQE3	449 aa		4.14	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms