RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 UBE2AP49459 152 aa2.16□□□□□ -2.06
VPS41-207ENST00000439468 CRISP1P54107 249 aa2.16□□□□□ -2.06
VPS41-207ENST00000439468 KRTAP10-1P60331 282 aa2.16□□□□□ -2.06
VPS41-207ENST00000439468 GBE1Q04446 702 aa2.16□□□□□ -2.06
VPS41-207ENST00000439468 CLINT1Q14677 625 aa2.16□□□□□ -2.06
VPS41-207ENST00000439468 RGNQ15493 299 aa2.16□□□□□ -2.06
VPS41-207ENST00000439468 CCNJQ5T5M9 372 aa2.16□□□□□ -2.06
VPS41-207ENST00000439468 HES5Q5TA89 166 aa2.16□□□□□ -2.06
VPS41-207ENST00000439468 ZNF691Q5VV52 312 aa2.16□□□□□ -2.06
VPS41-207ENST00000439468 TMEM220Q6QAJ8 160 aa2.16□□□□□ -2.06
VPS41-207ENST00000439468 Q6ZR03 302 aa2.16□□□□□ -2.06
VPS41-207ENST00000439468 OAFQ86UD1 273 aa2.16□□□□□ -2.06
VPS41-207ENST00000439468 CCDC148Q8NFR7 591 aa2.16□□□□□ -2.06
VPS41-207ENST00000439468 OR10J6PQ8NGY7 276 aa2.16□□□□□ -2.06
VPS41-207ENST00000439468 FAM81AQ8TBF8 368 aa2.16□□□□□ -2.06
VPS41-207ENST00000439468 CAPSLQ8WWF8 208 aa2.16□□□□□ -2.06
VPS41-207ENST00000439468 ECHDC3Q96DC8 303 aa2.16□□□□□ -2.06
VPS41-207ENST00000439468 PRRC1Q96M27 445 aa2.16□□□□□ -2.06
VPS41-207ENST00000439468 COL21A1Q96P44 957 aa2.16□□□□□ -2.06
VPS41-207ENST00000439468 MYOZ2Q9NPC6 264 aa2.16□□□□□ -2.06
VPS41-207ENST00000439468 SAMSN1Q9NSI8 373 aaKnown RBP2.16□□□□□ -2.06
VPS41-207ENST00000439468 ZNF629Q9UEG4 869 aaPredicted RBP2.16□□□□□ -2.06
VPS41-207ENST00000439468 BTAF1O14981 1849 aa2.16□□□□□ -2.06
VPS41-207ENST00000439468 HFM1A2PYH4 1435 aa2.16□□□□□ -2.06
VPS41-207ENST00000439468 CENPFP49454 3210 aa2.15□□□□□ -2.06
VPS41-207ENST00000439468 KIF1AQ12756 1690 aa2.15□□□□□ -2.06
VPS41-207ENST00000439468 ALS2Q96Q42 1657 aa2.15□□□□□ -2.06
VPS41-207ENST00000439468 MBD5Q9P267 1494 aa2.15□□□□□ -2.06
VPS41-207ENST00000439468 TRPM3Q9HCF6 1732 aaPredicted RBP2.15□□□□□ -2.07
VPS41-207ENST00000439468 IGLV4-69A0A075B6H9 119 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 TRAV39A0A0B4J263 110 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 A0A0B4J2A0 478 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 A0A1B0GW55 424 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 TCP11X1B4DZS4 312 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 C9JVG2 144 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 INS-IGF2F8WCM5 200 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 NUPL2O15504 423 aaKnown RBP2.15□□□□□ -2.07
VPS41-207ENST00000439468 CDH16O75309 829 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 H6PDO95479 791 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 ZDHHC11BP0C7U3 371 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 DUX4L2P0CJ85 424 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 DUX4L3P0CJ86 424 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 DUX4L5P0CJ88 424 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 DUX4L6P0CJ89 424 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 DUX4L7P0CJ90 424 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 OMGP23515 440 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 GPX4P36969 197 aaPredicted RBP2.15□□□□□ -2.07
VPS41-207ENST00000439468 SYKP43405 635 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 CYB561P49447 251 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 ZNF138P52744 262 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 C21orf59P57076 290 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 RPS15P62841 145 aaKnown RBP2.15□□□□□ -2.07
VPS41-207ENST00000439468 SLAQ13239 276 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 MAB21L1Q13394 359 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 ILKQ13418 452 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 IDI1Q13907 227 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 SNRNP35Q16560 246 aaKnown RBP2.15□□□□□ -2.07
VPS41-207ENST00000439468 C9orf135Q5VTT2 229 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 ANKRD22Q5VYY1 191 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 C22orf42Q6IC83 251 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 DUX4L9Q6RFH8 374 aaPredicted RBP2.15□□□□□ -2.07
VPS41-207ENST00000439468 METAP1DQ6UB28 335 aaPredicted RBP2.15□□□□□ -2.07
VPS41-207ENST00000439468 PLET1Q6UQ28 207 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 TEX43Q6ZNM6 134 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 SLC16A14Q7RTX9 510 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 LINC01551Q86U37 167 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 FAM86B1Q8N7N1 296 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 CYB561D1Q8N8Q1 229 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 OR4A4PQ8NGN8 299 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 STARD8Q92502 1023 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 SLC38A4Q969I6 547 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 ZNF578Q96N58 590 aaPredicted RBP2.15□□□□□ -2.07
VPS41-207ENST00000439468 BPIFA3Q9BQP9 254 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 CHAC1Q9BUX1 264 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 SLC17A9Q9BYT1 436 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 VCXQ9H320 206 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 GEMIN7Q9H840 131 aaKnown RBP2.15□□□□□ -2.07
VPS41-207ENST00000439468 VPS37BQ9H9H4 285 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 NOX3Q9HBY0 568 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 WFDC1Q9HC57 220 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 TMEM9BQ9NQ34 198 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 RAB20Q9NX57 234 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 GCNT4Q9P109 453 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 UXTQ9UBK9 157 aaPredicted RBP2.15□□□□□ -2.07
VPS41-207ENST00000439468 DUX4Q9UBX2 424 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 SHPKQ9UHJ6 478 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 PSG11Q9UQ72 335 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 DENND4AQ7Z401 1863 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 COL18A1P39060 1754 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 ADAMTSL1Q8N6G6 1762 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 TECPR2O15040 1411 aa2.15□□□□□ -2.07
VPS41-207ENST00000439468 RRBP1Q9P2E9 1410 aaKnown RBP2.15□□□□□ -2.07
VPS41-207ENST00000439468 SETXQ7Z333 2677 aaKnown RBP2.14□□□□□ -2.07
VPS41-207ENST00000439468 ATP7BP35670 1465 aa2.14□□□□□ -2.07
VPS41-207ENST00000439468 ATRXP46100 2492 aa2.14□□□□□ -2.07
VPS41-207ENST00000439468 INSRP06213 1382 aa2.14□□□□□ -2.07
VPS41-207ENST00000439468 LAMB2P55268 1798 aa2.14□□□□□ -2.07
VPS41-207ENST00000439468 A0A075B6Q4 140 aa2.14□□□□□ -2.07
VPS41-207ENST00000439468 IGLV1-36A0A0B4J1U3 117 aa2.14□□□□□ -2.07
VPS41-207ENST00000439468 TRBV11-1A0A0K0K1C0 115 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms