RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 LYPD6Q86Y78 171 aa10.54□□□□□ -0.72
CD44-209ENST00000433892 ZNF584Q8IVC4 421 aa10.54□□□□□ -0.72
CD44-209ENST00000433892 NAXDQ8IW45 347 aa10.54□□□□□ -0.72
CD44-209ENST00000433892 APCDD1LQ8NCL9 501 aa10.54□□□□□ -0.72
CD44-209ENST00000433892 OR13C8Q8NGS7 320 aa10.54□□□□□ -0.72
CD44-209ENST00000433892 STT3BQ8TCJ2 826 aa10.54□□□□□ -0.72
CD44-209ENST00000433892 C5orf34Q96MH7 638 aa10.54□□□□□ -0.72
CD44-209ENST00000433892 NUDT22Q9BRQ3 303 aa10.54□□□□□ -0.72
CD44-209ENST00000433892 SLCO5A1Q9H2Y9 848 aa10.54□□□□□ -0.72
CD44-209ENST00000433892 GDF2Q9UK05 429 aaPredicted RBP10.54□□□□□ -0.72
CD44-209ENST00000433892 LOC390937A0A1W2PQ73 354 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 ANKUB1A6NFN9 424 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 RFPL4AA6NLU0 287 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 RFPL4AL1F8VTS6 287 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 AQP8O94778 261 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 UBCP0CG48 685 aaKnown RBP10.53□□□□□ -0.72
CD44-209ENST00000433892 SRFP11831 508 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 RPA2P15927 270 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 ZP3P21754 424 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 CALCRP30988 508 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 C17orf67Q0P5P2 114 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 ZP4Q12836 540 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 FOXF1Q12946 379 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 CDNFQ49AH0 187 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 COX15Q7KZN9 410 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 ZNF546Q86UE3 836 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 MISPQ8IVT2 679 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 BEST3Q8N1M1 668 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 GVQW1Q8N7I0 195 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 PLPP5Q8NEB5 264 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 OR52N4Q8NGI2 321 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 MFSD8Q8NHS3 518 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 RNF133Q8WVZ7 376 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 ST8SIA1Q92185 356 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 SLC7A5P2Q9GIP4 190 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 PTGES2Q9H7Z7 377 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 RHBDD3Q9Y3P4 386 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 HRH3Q9Y5N1 445 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 A0A0A6YYH2 397 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 A6NJ64 397 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 HLA-AP01891 365 aaKnown RBP10.53□□□□□ -0.72
CD44-209ENST00000433892 OPN1LWP04000 364 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 RLN2P04090 185 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 CD74P04233 296 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 MPGP29372 298 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 NUP62P37198 522 aaPredicted RBP10.53□□□□□ -0.72
CD44-209ENST00000433892 APOBEC1P41238 236 aaKnown RBP10.53□□□□□ -0.72
CD44-209ENST00000433892 BIDP55957 195 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 UBXN2BQ14CS0 331 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 SMAD2Q15796 467 aaKnown RBP10.53□□□□□ -0.72
CD44-209ENST00000433892 SLC22A6Q4U2R8 563 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 OR52W1Q6IF63 320 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 ZNF813Q6ZN06 617 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 FJX1Q86VR8 437 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 CDH26Q8IXH8 852 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 SLC25A45Q8N413 288 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 NKAIN3Q8N8D7 197 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 CHST4Q8NCG5 386 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 CADM4Q8NFZ8 388 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 C11orf40Q8WZ69 217 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 SLAMF6Q96DU3 332 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 ADAT3Q96EY9 351 aaPredicted RBP10.53□□□□□ -0.72
CD44-209ENST00000433892 FOXQ1Q9C009 403 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 ZNF576Q9H609 170 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 CHST11Q9NPF2 352 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 FAM206AQ9NX38 181 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 PFDN2Q9UHV9 154 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 MTCH2Q9Y6C9 303 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 SESN1Q9Y6P5 492 aa10.53□□□□□ -0.72
CD44-209ENST00000433892 METTL21EPA6NDL7 271 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 OR5H14A6NHG9 310 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 RAB27BO00194 218 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 CCSO14618 274 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 TTRP02766 147 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 HOXD4P09016 255 aaPredicted RBP10.52□□□□□ -0.73
CD44-209ENST00000433892 GLB1P16278 677 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 BDKRB2P30411 391 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 MMP16P51512 607 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 CXADRP78310 365 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 UNC119Q13432 240 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 LRRC37A5PQ49AS3 106 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 CLVS2Q5SYC1 327 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 C3orf33Q6P1S2 294 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 DEGS2Q6QHC5 323 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 TRAPPC6BQ86SZ2 158 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 CARFQ8N187 725 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 PAQR4Q8N4S7 273 aaPredicted RBP10.52□□□□□ -0.73
CD44-209ENST00000433892 SLC38A9Q8NBW4 561 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 OR6K3Q8NGY3 331 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 OR1S1Q8NH92 325 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 AQP3Q92482 292 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 SEC22AQ96IW7 307 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 EDEM2Q9BV94 578 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 MED9Q9NWA0 146 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 VSIG4Q9Y279 399 aa10.52□□□□□ -0.73
CD44-209ENST00000433892 NOP16Q9Y3C1 178 aaKnown RBP10.52□□□□□ -0.73
CD44-209ENST00000433892 ASCC3Q8N3C0 2202 aaKnown RBP10.51□□□□□ -0.73
CD44-209ENST00000433892 SYT7O43581 403 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms