RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 CGGBP1Q9UFW8 167 aaPredicted RBP10.12□□□□□ -0.79
USP4-205ENST00000431357 EMC9Q9Y3B6 208 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 SLCO1B1Q9Y6L6 691 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 COL5A1P20908 1838 aaPredicted RBP10.12□□□□□ -0.79
USP4-205ENST00000431357 TRAV14DV4A0A0A6YYC5 116 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 LOC107986453A0A1B0GWG9 222 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 DCDC2BA2VCK2 349 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 RHPN2P1A8MT19 583 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 FTCDNL1E5RQL4 147 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 SOX1O00570 391 aaPredicted RBP10.12□□□□□ -0.79
USP4-205ENST00000431357 SDC3O75056 442 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 OR2F2O95006 317 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 HPP00738 406 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 ATXN8OSP0DMR3 200 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 HLA-GP17693 338 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 CD27P26842 260 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 CD34P28906 385 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 OR2F1Q13607 317 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 MELKQ14680 651 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 C14orf28Q4W4Y0 310 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 OTPQ5XKR4 325 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 TMED4Q7Z7H5 227 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 LYPD6Q86Y78 171 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 GALNT16Q8N428 558 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 KCNRGQ8N5I3 272 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 SLC26A10Q8NG04 563 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 ASB10Q8WXI3 467 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 ST8SIA1Q92185 356 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 AQP3Q92482 292 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 DNAJA3Q96EY1 480 aa10.12□□□□□ -0.79
USP4-205ENST00000431357 C5orf42Q9H799 3197 aa10.11□□□□□ -0.79
USP4-205ENST00000431357 A0A1W2PR77 199 aa10.11□□□□□ -0.79
USP4-205ENST00000431357 SHISA7A6NL88 538 aa10.11□□□□□ -0.79
USP4-205ENST00000431357 NPIPA5E9PKD4 350 aa10.11□□□□□ -0.79
USP4-205ENST00000431357 M0QYG6 137 aa10.11□□□□□ -0.79
USP4-205ENST00000431357 HSD11B1P28845 292 aa10.11□□□□□ -0.79
USP4-205ENST00000431357 SPOCK1Q08629 439 aa10.11□□□□□ -0.79
USP4-205ENST00000431357 PAPD4Q6PIY7 484 aaKnown RBP10.11□□□□□ -0.79
USP4-205ENST00000431357 LRFN4Q6PJG9 635 aa10.11□□□□□ -0.79
USP4-205ENST00000431357 SYT13Q7L8C5 426 aa10.11□□□□□ -0.79
USP4-205ENST00000431357 MDGA2Q7Z553 956 aa10.11□□□□□ -0.79
USP4-205ENST00000431357 STX12Q86Y82 276 aa10.11□□□□□ -0.79
USP4-205ENST00000431357 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.11□□□□□ -0.79
USP4-205ENST00000431357 ZDHHC22Q8N966 263 aa10.11□□□□□ -0.79
USP4-205ENST00000431357 ZBTB44Q8NCP5 570 aa10.11□□□□□ -0.79
USP4-205ENST00000431357 MFSD8Q8NHS3 518 aa10.11□□□□□ -0.79
USP4-205ENST00000431357 ST7LQ8TDW4 575 aa10.11□□□□□ -0.79
USP4-205ENST00000431357 ST8SIA2Q92186 375 aa10.11□□□□□ -0.79
USP4-205ENST00000431357 FAM46BQ96A09 425 aa10.11□□□□□ -0.79
USP4-205ENST00000431357 ZBTB8AQ96BR9 441 aa10.11□□□□□ -0.79
USP4-205ENST00000431357 COQ3Q9NZJ6 369 aa10.11□□□□□ -0.79
USP4-205ENST00000431357 DHCR7Q9UBM7 475 aaKnown RBP10.11□□□□□ -0.79
USP4-205ENST00000431357 GDF2Q9UK05 429 aaPredicted RBP10.11□□□□□ -0.79
USP4-205ENST00000431357 NPIPA1Q9UND3 350 aa10.11□□□□□ -0.79
USP4-205ENST00000431357 TDRD6O60522 2096 aaKnown RBP10.11□□□□□ -0.79
USP4-205ENST00000431357 TMEM269A0A1B0GVZ9 245 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 KANTRA0A1W2PQU2 76 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 ANKUB1A6NFN9 424 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 OR5H14A6NHG9 310 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 POM121CA8CG34 1229 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 LMO7DNF2Z398 122 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 ALOX12BO75342 701 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 FCER2P06734 321 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 H2BFMP0C1H6 154 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 BDKRB2P30411 391 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 CD96P40200 585 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 GSK3AP49840 483 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 MMP16P51512 607 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 DHRS2Q13268 280 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 ZNF260Q3ZCT1 412 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 RNASE10Q5GAN6 216 aaKnown RBP10.1□□□□□ -0.79
USP4-205ENST00000431357 FAHD2BQ6P2I3 314 aaPredicted RBP10.1□□□□□ -0.79
USP4-205ENST00000431357 BEND4Q6ZU67 534 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 H1FNTQ75WM6 255 aaPredicted RBP10.1□□□□□ -0.79
USP4-205ENST00000431357 DCXRQ7Z4W1 244 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 SLC25A42Q86VD7 318 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 PLPP5Q8NEB5 264 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 PXT1Q8NFP0 134 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 OR51A2Q8NGJ7 313 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 OR13C8Q8NGS7 320 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 FAHD2AQ96GK7 314 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 NUDT16L1Q9BRJ7 211 aaKnown RBP10.1□□□□□ -0.79
USP4-205ENST00000431357 C1QTNF6Q9BXI9 259 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 TINAGQ9UJW2 476 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 KLK13Q9UKR3 277 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 TRANK1O15050 2925 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 IGHV1OR15-9A0A0B4J2B8 117 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 CPED1A4D0V7 1026 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 C17orf51A8MQB3 221 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 MS4A18H0YCH9 400 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 SPDEFO95238 335 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 MPZL1O95297 269 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 BPNT1O95861 308 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 SPTBP11277 2137 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 TBPP20226 339 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 APOBEC1P41238 236 aaKnown RBP10.1□□□□□ -0.79
USP4-205ENST00000431357 SUMO3P55854 103 aaPredicted RBP10.1□□□□□ -0.79
USP4-205ENST00000431357 HNRNPKP61978 463 aaKnown RBP eCLIP10.1□□□□□ -0.79
USP4-205ENST00000431357 NR0B2Q15466 257 aa10.1□□□□□ -0.79
USP4-205ENST00000431357 ZNF124Q15973 351 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms