RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SSSCA1O60232 199 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 FURINP09958 794 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 PTBP1P26599 531 aaKnown RBP eCLIP6.27□□□□□ -1.413e-7■■■■□ 20.5
SCN1A-204ENST00000423058 HOXD13P35453 343 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 DHODHQ02127 395 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 SIX1Q15475 284 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-204ENST00000423058 FADS6Q8N9I5 356 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 SLC37A2Q8TED4 501 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 PIGTQ969N2 578 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 NEIL1Q96FI4 390 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-204ENST00000423058 DOCK5Q9H7D0 1870 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 IGKV6D-21A0A0A0MT36 114 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 IGKV6-21A0A0C4DH24 114 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 LGALS7P47929 136 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 ELLP55199 621 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-204ENST00000423058 FAM189BP81408 668 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 HOXC5Q00444 222 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 METRNLQ641Q3 311 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 DRAM2Q6UX65 266 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 TMPRSS11FQ6ZWK6 438 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 SLCO1C1Q9NYB5 712 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 HRH3Q9Y5N1 445 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 DNAJC25-GNG10A0A024R161 153 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 HRASP01112 189 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 RAF1P04049 648 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 ACHEP22303 614 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 G0S2P27469 103 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 BRS3P32247 399 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 RHOBP62745 196 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 SORDQ00796 357 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 FZD2Q14332 565 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 IAH1Q2TAA2 248 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-204ENST00000423058 TUSC1Q2TAM9 212 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 SLC24A4Q8NFF2 622 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 OR1L1Q8NH94 360 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 TMEM40Q8WWA1 233 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 PELI1Q96FA3 418 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 OPALINQ96PE5 141 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 C1QTNF6Q9BXI9 259 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 MED20Q9H944 212 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 MMP17Q9ULZ9 603 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 KCNMB2Q9Y691 235 aa6.27□□□□□ -1.41
SCN1A-204ENST00000423058 G3V2L1 256 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 MITFO75030 526 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-204ENST00000423058 CBR3O75828 277 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 H2AFB1P0C5Y9 115 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 SOX18P35713 384 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 LIM2P55344 173 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 SYPL1Q16563 259 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 LRRC26Q2I0M4 334 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 SLC48A1Q6P1K1 146 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 SCD5Q86SK9 330 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 ETFBKMTQ8IXQ9 262 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 OR4F5Q8NH21 305 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 LGALS14Q8TCE9 139 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 GHSRQ92847 366 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 OR4F4Q96R69 305 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 GABARAPL1Q9H0R8 117 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 ZBP1Q9H171 429 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF835Q9Y2P0 537 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 GPR45Q9Y5Y3 372 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 A3GALT2U3KPV4 340 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 TOGARAM1Q9Y4F4 1720 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 MN1Q10571 1320 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-204ENST00000423058 LINC01553A4QN01 128 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 M0R135 149 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 SOD1P00441 154 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 PITX1P78337 314 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-204ENST00000423058 FCRL6Q6DN72 434 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 TAS1R1Q7RTX1 841 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 ARHGEF39Q8N4T4 335 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 OR13H1Q8NG92 308 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 OR5D13Q8NGL4 314 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 DYNLRB2Q8TF09 96 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 ROBO4Q8WZ75 1007 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF799Q96GE5 643 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 MRGPRX4Q96LA9 322 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 TNFRSF13CQ96RJ3 184 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 OR51I2Q9H344 312 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 CTSFQ9UBX1 484 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 TRBV4-1A0A0J9YWV2 114 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF816-ZNF321PA0A0X1KG74 233 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 E5RGE8 158 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 DSCR4P56555 118 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-204ENST00000423058 DUSP2Q05923 314 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 TRA2AQ13595 282 aaKnown RBP eCLIP6.26□□□□□ -1.41
SCN1A-204ENST00000423058 TBCEQ15813 527 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF766Q5HY98 468 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 SLC38A9Q8NBW4 561 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 PXT1Q8NFP0 134 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 GPR32P1Q8NGA4 272 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 OR4F17Q8NGA8 305 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 OR51H1Q8NH63 302 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 LILRB1Q8NHL6 650 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-204ENST00000423058 DDOQ99489 341 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 MS4A8Q9BY19 250 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF586Q9NXT0 402 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 B3GALT5Q9Y2C3 310 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 PLCH1Q4KWH8 1693 aa6.26□□□□□ -1.41
SCN1A-204ENST00000423058 TRGV5A0A0B4J1U4 118 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms