RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 LOC107986453A0A1B0GWG9 222 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 OR14I1A6ND48 311 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 C1QTNF9BB2RNN3 333 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 TAF4O00268 1085 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 TTRP02766 147 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 C1QTNF9P0C862 333 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 PATE4P0C8F1 98 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 SLC2A1P11166 492 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 RAB3BP20337 219 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 S100A5P33763 92 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 ZNF121P58317 390 aaPredicted RBP12.33□□□□□ -0.44
GPNMB-203ENST00000409458 ARF1P84077 181 aaKnown RBP12.33□□□□□ -0.44
GPNMB-203ENST00000409458 DYNC1I2Q13409 638 aaKnown RBP12.33□□□□□ -0.44
GPNMB-203ENST00000409458 ZNF846Q147U1 533 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 STK11Q15831 433 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 ACSF3Q4G176 576 aaPredicted RBP12.33□□□□□ -0.44
GPNMB-203ENST00000409458 CEP78Q5JTW2 689 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 ELFN2Q5R3F8 820 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 SFXN4Q6P4A7 337 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 ZNF813Q6ZN06 617 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 LAX1Q8IWV1 398 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 UBE2J2Q8N2K1 259 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 Q8NA96 180 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 C9orf106Q8NAJ2 232 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 FGFBP3Q8TAT2 258 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 AP3S1Q92572 193 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 WDR12Q9GZL7 423 aaKnown RBP12.33□□□□□ -0.44
GPNMB-203ENST00000409458 NIPAL2Q9H841 368 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 MOB1AQ9H8S9 216 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 HMG20AQ9NP66 347 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 PLEK2Q9NYT0 353 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 UPB1Q9UBR1 384 aa12.33□□□□□ -0.44
GPNMB-203ENST00000409458 P2RY10O00398 339 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 RGS5O15539 181 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 ISG15P05161 165 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 ACSM4P0C7M7 580 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 FAM87AP0C7U9 286 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 UBCP0CG48 685 aaKnown RBP12.32□□□□□ -0.44
GPNMB-203ENST00000409458 ZNF32P17041 273 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 SRMP19623 302 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 ACHEP22303 614 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 FAPQ12884 760 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 DCTN2Q13561 401 aaKnown RBP12.32□□□□□ -0.44
GPNMB-203ENST00000409458 RAB35Q15286 201 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 GUSBP1Q15486 140 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 SLC25A35Q3KQZ1 300 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 NRN1LQ496H8 165 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 ZNF585AQ6P3V2 769 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 FAM180AQ6UWF9 173 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 ZNF704Q6ZNC4 412 aaPredicted RBP12.32□□□□□ -0.44
GPNMB-203ENST00000409458 SLC16A14Q7RTX9 510 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 SKA3Q8IX90 412 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 ELMOD2Q8IZ81 293 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 GCNT2Q8N0V5 402 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 SNRNP27Q8WVK2 155 aaKnown RBP12.32□□□□□ -0.44
GPNMB-203ENST00000409458 SLC7A6Q92536 515 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 TMEM106AQ96A25 262 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 GFI1Q99684 422 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 KCNJ15Q99712 375 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 PLGRKTQ9HBL7 147 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 SLC24A3Q9HC58 644 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 GLRX2Q9NS18 164 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 NUFIP1Q9UHK0 495 aaKnown RBP12.32□□□□□ -0.44
GPNMB-203ENST00000409458 AK6Q9Y3D8 172 aaKnown RBP12.32□□□□□ -0.44
GPNMB-203ENST00000409458 CMAHPQ9Y471 501 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 ATMQ13315 3056 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 TRAV8-7A0A075B6U6 113 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 ANKRD61A6NGH8 418 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 SGCEO43556 437 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 CTSSP25774 331 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 THBS2P35442 1172 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 GALK2Q01415 458 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 SCRN3Q0VDG4 424 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 RSPO1Q2MKA7 263 aaPredicted RBP12.32□□□□□ -0.44
GPNMB-203ENST00000409458 LINC00303Q3SY05 128 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 IDNKQ5T6J7 187 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 ZNF774Q6NX45 483 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 CCDC190Q86UF4 302 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 ZNF283Q8N7M2 679 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 OR8B12Q8NGG6 310 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 ASB5Q8WWX0 329 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 BORCS5Q969J3 196 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 MIXL1Q9H2W2 232 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 ABCB9Q9NP78 766 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 ZNF224Q9NZL3 707 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 MALT1Q9UDY8 824 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 HHLA2Q9UM44 414 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 DHDHQ9UQ10 334 aa12.32□□□□□ -0.44
GPNMB-203ENST00000409458 PTPRQQ9UMZ3 2332 aa12.31□□□□□ -0.44
GPNMB-203ENST00000409458 A0A096LPE4 126 aa12.31□□□□□ -0.44
GPNMB-203ENST00000409458 A0A1W2PPZ6 126 aa12.31□□□□□ -0.44
GPNMB-203ENST00000409458 AHRRA9YTQ3 701 aa12.31□□□□□ -0.44
GPNMB-203ENST00000409458 F5H5K5 113 aa12.31□□□□□ -0.44
GPNMB-203ENST00000409458 SYNGR3O43761 229 aa12.31□□□□□ -0.44
GPNMB-203ENST00000409458 FARS2O95363 451 aaKnown RBP12.31□□□□□ -0.44
GPNMB-203ENST00000409458 RAF1P04049 648 aa12.31□□□□□ -0.44
GPNMB-203ENST00000409458 DBHP09172 617 aa12.31□□□□□ -0.44
GPNMB-203ENST00000409458 MMP7P09237 267 aaPredicted RBP12.31□□□□□ -0.44
GPNMB-203ENST00000409458 CFL1P23528 166 aaKnown RBP12.31□□□□□ -0.44
GPNMB-203ENST00000409458 OTX1P32242 354 aaPredicted RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms