RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 TMIGD3P0DMS9 266 aaPredicted RBP11.84□□□□□ -0.51
LIMS1-204ENST00000409441 NTF4P34130 210 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 EIF2B2P49770 351 aaKnown RBP11.84□□□□□ -0.51
LIMS1-204ENST00000409441 TAB1Q15750 504 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 HSD17B12Q53GQ0 312 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 RIPPLY2Q5TAB7 128 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 ZNF544Q6NX49 715 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 MZT2BQ6NZ67 158 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 FAM214BQ7L5A3 538 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 OR6V1Q8N148 313 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 CELF2-AS1Q8N7Q2 184 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 NAXEQ8NCW5 288 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 OR13C5Q8NGS8 318 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 RND1Q92730 232 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 ZFP3Q96NJ6 502 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 TSSK2Q96PF2 358 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 ZNF385AQ96PM9 386 aaKnown RBP11.84□□□□□ -0.51
LIMS1-204ENST00000409441 INTS14Q96SY0 518 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 KCNJ15Q99712 375 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 VSX1Q9NZR4 365 aaPredicted RBP11.84□□□□□ -0.51
LIMS1-204ENST00000409441 EMC3Q9P0I2 261 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 RABL2AQ9UBK7 228 aaPredicted RBP11.84□□□□□ -0.51
LIMS1-204ENST00000409441 LAMP5Q9UJQ1 280 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 RABL2BQ9UNT1 228 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 KIAA1549Q9HCM3 1950 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 ESPL1Q14674 2120 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 A0A0G2JNJ9 132 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 NPIPB13A6NJU9 1138 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 FAM171A2A8MVW0 826 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 NPIPB4C9JG80 1138 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 MAGEB4O15481 346 aaPredicted RBP11.83□□□□□ -0.52
LIMS1-204ENST00000409441 TRAF3IP2O43734 574 aaPredicted RBP11.83□□□□□ -0.52
LIMS1-204ENST00000409441 SSX4O60224 188 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 SS18L1O75177 396 aaPredicted RBP11.83□□□□□ -0.52
LIMS1-204ENST00000409441 ZNF432O94892 652 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 ABHD16AO95870 558 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 CRHP06850 196 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 IFNGR1P15260 489 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 PSMB10P40306 273 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 KIR2DL2P43627 348 aaPredicted RBP11.83□□□□□ -0.52
LIMS1-204ENST00000409441 CLDN17P56750 224 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 OR10A3P58181 314 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 ALKBH1Q13686 389 aaKnown RBP11.83□□□□□ -0.52
LIMS1-204ENST00000409441 P2RY14Q15391 338 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 GUSBP1Q15486 140 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 ACKR1Q16570 336 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 C4orf17Q53FE4 359 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 HACD4Q5VWC8 232 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 LYPD4Q6UWN0 246 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 BAIAP2L2Q6UXY1 529 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 SLC35D2Q76EJ3 337 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 RDH10Q8IZV5 341 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 CNEP1R1Q8N9A8 125 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 ZBTB8BQ8NAP8 495 aaPredicted RBP11.83□□□□□ -0.52
LIMS1-204ENST00000409441 TRMT10AQ8TBZ6 339 aaKnown RBP11.83□□□□□ -0.52
LIMS1-204ENST00000409441 C11orf54Q9H0W9 315 aaPredicted RBP11.83□□□□□ -0.52
LIMS1-204ENST00000409441 Q9UFV3 132 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 NOSIPQ9Y314 301 aaKnown RBP11.83□□□□□ -0.52
LIMS1-204ENST00000409441 BOLA1Q9Y3E2 137 aa11.83□□□□□ -0.52
LIMS1-204ENST00000409441 PRSS37A4D1T9 235 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 PYCARD-AS1I3L0S3 204 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 DCTN6O00399 190 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 PLA2G10O15496 165 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 MRPL33O75394 65 aaKnown RBP11.82□□□□□ -0.52
LIMS1-204ENST00000409441 UPK3AO75631 287 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 TNFSF13O75888 250 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 TRAPPC2P0DI81 140 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 TRAPPC2BP0DI82 140 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 ALOX5APP20292 161 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 CTSSP25774 331 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 MAPK3P27361 379 aaPredicted RBP11.82□□□□□ -0.52
LIMS1-204ENST00000409441 AGTR1P30556 359 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 MAP2K3P46734 347 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 PYHIN1Q6K0P9 492 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 SPATC1Q76KD6 591 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 AAED1Q7RTV5 226 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 NUFIP2Q7Z417 695 aaKnown RBP11.82□□□□□ -0.52
LIMS1-204ENST00000409441 YIPF7Q8N8F6 280 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 SAMD12Q8N8I0 201 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 OR6N2Q8NGY6 317 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 ENKURQ8TC29 256 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 ASB17Q8WXJ9 295 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 THRSPQ92748 146 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 NEDD4LQ96PU5 975 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 OR14A2Q96R54 314 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 MRI1Q9BV20 369 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 EMC6Q9BV81 110 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 SYT4Q9H2B2 425 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 PARPBPQ9NWS1 579 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 MED29Q9NX70 200 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 MALT1Q9UDY8 824 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 MRM2Q9UI43 246 aaKnown RBP11.82□□□□□ -0.52
LIMS1-204ENST00000409441 B9D1Q9UPM9 204 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 EMC9Q9Y3B6 208 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 A6NIZ1 184 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 ZNF726A6NNF4 738 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 PRR32B1ATL7 298 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 CENPBD1B2RD01 187 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 H7C1C5 153 aa11.82□□□□□ -0.52
LIMS1-204ENST00000409441 EIF4EP06730 217 aaKnown RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms