RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 AMDHD2Q9Y303 409 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 PRRC2CQ9Y520 2896 aaKnown RBP12.44□□□□□ -0.42
SKA1-202ENST00000398452 ARHGAP21Q5T5U3 1957 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 A8MXE2 369 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 CCRL2O00421 344 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 LRRTM2O43300 516 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 INMTO95050 263 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 TFAP2AP05549 437 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 HTR5AP47898 357 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 FOXG1P55316 489 aaPredicted RBP12.43□□□□□ -0.42
SKA1-202ENST00000398452 TPTEP56180 551 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 RAB1AP62820 205 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 RAB39AQ14964 217 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 GABRA6Q16445 453 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 TSTQ16762 297 aaKnown RBP12.43□□□□□ -0.42
SKA1-202ENST00000398452 TIMM50Q3ZCQ8 353 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 CCDC58Q4VC31 144 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 C4orf17Q53FE4 359 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 HIKESHIQ53FT3 197 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 XAF1Q6GPH4 301 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 CFAP77Q6ZQR2 320 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 NCCRP1Q6ZVX7 275 aaPredicted RBP12.43□□□□□ -0.42
SKA1-202ENST00000398452 SSX8Q7RTT4 187 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 ZNF283Q8N7M2 679 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 CA5BP1Q8WTZ4 195 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 FBXO17Q96EF6 278 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 MAP6Q96JE9 813 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 KCNJ15Q99712 375 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 OR2H1Q9GZK4 316 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 COMMD4Q9H0A8 199 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 NDUFA13Q9P0J0 144 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 MRM2Q9UI43 246 aaKnown RBP12.43□□□□□ -0.42
SKA1-202ENST00000398452 SLC5A6Q9Y289 635 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 LRP12Q9Y561 859 aa12.43□□□□□ -0.42
SKA1-202ENST00000398452 A1L4Q6 167 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 OR6C6A6NF89 314 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 LOC110117498-PIK3R3F6TDL0 507 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 MAGEB4O15481 346 aaPredicted RBP12.42□□□□□ -0.42
SKA1-202ENST00000398452 HLA-HP01893 362 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 ADRA2AP08913 450 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 PSMB1P20618 241 aaKnown RBP12.42□□□□□ -0.42
SKA1-202ENST00000398452 DCTDP32321 178 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 APLNRP35414 380 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 CD79BP40259 229 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 SLC6A9P48067 706 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 ASCL1P50553 236 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 GALK2Q01415 458 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 ACSM1Q08AH1 577 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 PABPC1L2AQ5JQF8 200 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 C1QTNF12Q5T7M4 302 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 LIPNQ5VXI9 398 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 RPL22L1Q6P5R6 122 aaKnown RBP12.42□□□□□ -0.42
SKA1-202ENST00000398452 ZNF474Q6S9Z5 364 aaPredicted RBP12.42□□□□□ -0.42
SKA1-202ENST00000398452 P2RY8Q86VZ1 359 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 RFLNBQ8N5W9 214 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 OR1F12Q8NHA8 337 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 AMELYQ99218 206 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 COQ7Q99807 217 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 MOB1AQ9H8S9 216 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 SLC17A5Q9NRA2 495 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 ACOXLQ9NUZ1 547 aa12.42□□□□□ -0.42
SKA1-202ENST00000398452 LSM2Q9Y333 95 aaKnown RBP12.42□□□□□ -0.42
SKA1-202ENST00000398452 HIVEP3Q5T1R4 2406 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 TRBV2A0A0J9YWF9 115 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 PNMA8CA0A1B0GUJ8 204 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 TMEM269A0A1B0GVZ9 245 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 CLEC18AA5D8T8 446 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 FAM90A27PA6NNH2 459 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 F5H5K5 113 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 C16orf97H3BN30 126 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 ANXA2P07355 339 aaKnown RBP12.41□□□□□ -0.42
SKA1-202ENST00000398452 PATE4P0C8F1 98 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 CELP19835 753 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 PSMA1P25786 263 aaKnown RBP12.41□□□□□ -0.42
SKA1-202ENST00000398452 PSMB10P40306 273 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 OPRL1P41146 370 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 ALDH3B2P48448 385 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 TGM4P49221 684 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 GDI2P50395 445 aaKnown RBP12.41□□□□□ -0.42
SKA1-202ENST00000398452 MMP16P51512 607 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 PRKXP51817 358 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 HIST1H3AP68431 136 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 PSG4Q00888 419 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 GPR50Q13585 617 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 TRAM1Q15629 374 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 CCDC92Q53HC0 331 aaPredicted RBP12.41□□□□□ -0.42
SKA1-202ENST00000398452 HIST2H3PS2Q5TEC6 136 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 ZNF774Q6NX45 483 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 ARL9Q6T311 187 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 CLEC18BQ6UXF7 455 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 HIST2H3AQ71DI3 136 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 SATL1Q86VE3 508 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 CLEC18CQ8NCF0 446 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 OR1J2Q8NGS2 313 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 AKR7LQ8NHP1 331 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 PHF3Q92576 2039 aaKnown RBP12.41□□□□□ -0.42
SKA1-202ENST00000398452 PELI1Q96FA3 418 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 CCDC120Q96HB5 630 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 PSMG3-AS1Q96PY0 264 aa12.41□□□□□ -0.42
SKA1-202ENST00000398452 ZNF649Q9BS31 505 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms