RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 ZNF391Q9UJN7 358 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 GAB2Q9UQC2 676 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 LAMP3Q9UQV4 416 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 ABCC6O95255 1503 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 LOC107986453A0A1B0GWG9 222 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 POM121CA8CG34 1229 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 NTF3P20783 257 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 PCMT1P22061 227 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 FPR3P25089 353 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 PIGAP37287 484 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 PPP1CAP62136 330 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 SPATA46Q5T0L3 261 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 CORO6Q6QEF8 472 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 DRAM2Q6UX65 266 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 OR2Z1Q8NG97 314 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 OR2G3Q8NGZ4 309 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 LKAAEAR1Q8TD35 194 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 DVL3Q92997 716 aaPredicted RBP6.55□□□□□ -1.36
UPF2-203ENST00000397053 ACY3Q96HD9 319 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 OXGR1Q96P68 337 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 CRISPLD2Q9H0B8 497 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 THYN1Q9P016 225 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 C19orf53Q9UNZ5 99 aaPredicted RBP6.55□□□□□ -1.36
UPF2-203ENST00000397053 CEPT1Q9Y6K0 416 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 ARPC4-TTLL3A0A0A6YYG9 625 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 OR6C68A6NDL8 312 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 KRBOX1C9JBD0 128 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 H7BYZ3 331 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 CYR61O00622 381 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 ARHGAP33O14559 1287 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 CTDSP2O14595 271 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 COX7A2P2O60397 106 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 UPK1BO75841 260 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 NCR1O76036 304 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 UBL3O95164 117 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 OR4A8P0C604 315 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 NID1P14543 1247 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 G0S2P27469 103 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 OPRM1P35372 400 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 CEACAM3P40198 252 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 OPRL1P41146 370 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 CCL7P80098 99 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 ZNF77Q15935 545 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 CEACAM16Q2WEN9 425 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 LIPNQ5VXI9 398 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 PRR27Q6MZM9 219 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 SFXN4Q6P4A7 337 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 ZNF534Q76KX8 674 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 SLC38A9Q8NBW4 561 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 OR13C8Q8NGS7 320 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 CIB3Q96Q77 187 aaPredicted RBP6.55□□□□□ -1.36
UPF2-203ENST00000397053 LYSMD1Q96S90 227 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 MOB1AQ9H8S9 216 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 HINT3Q9NQE9 182 aaKnown RBP6.55□□□□□ -1.36
UPF2-203ENST00000397053 LIN7CQ9NUP9 197 aaKnown RBP6.55□□□□□ -1.36
UPF2-203ENST00000397053 CLEC5AQ9NY25 188 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 CACFD1Q9UGQ2 172 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 ETV7Q9Y603 341 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 V9GYS6 101 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 SEC16AO15027 2179 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 PDGFBP01127 241 aaPredicted RBP6.55□□□□□ -1.36
UPF2-203ENST00000397053 CD3EP07766 207 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 ALOX5APP20292 161 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 COX7A1P24310 79 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 PCSK6P29122 969 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 POU4F3Q15319 338 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 C9orf50Q5SZB4 431 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 LYPD4Q6UWN0 246 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 ALKAL2Q6UX46 152 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 Q6ZPB1 254 aaPredicted RBP6.55□□□□□ -1.36
UPF2-203ENST00000397053 ANKRD33Q7Z3H0 272 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 BAHD1Q8TBE0 780 aaPredicted RBP6.55□□□□□ -1.36
UPF2-203ENST00000397053 LRRC15Q8TF66 581 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 MRGPRX4Q96LA9 322 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 ALKBH3Q96Q83 286 aaPredicted RBP6.55□□□□□ -1.36
UPF2-203ENST00000397053 MED29Q9NX70 200 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 ASIC5Q9NY37 505 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 SLC17A4Q9Y2C5 497 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 STRAPQ9Y3F4 350 aaKnown RBP6.55□□□□□ -1.36
UPF2-203ENST00000397053 A0A087WZY1 265 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 IGHV3-15A0A0B4J1V0 119 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.54□□□□□ -1.36
UPF2-203ENST00000397053 FAM221AA4D161 298 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 RAB19A4D1S5 217 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 PRRT4C9JH25 899 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 ZNF195O14628 629 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 RBP4P02753 201 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 S100A8P05109 93 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 ADRA2CP18825 462 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 ZBTB25P24278 435 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 AMTP48728 403 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 RAB5CP51148 216 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 ZNF85Q03923 595 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 OLIG3Q7RTU3 272 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 RETREG3Q86VR2 466 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 VRK3Q8IV63 474 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 ARIH2OSQ8N7S6 290 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 BCORP1Q8N888 145 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 RNF141Q8WVD5 230 aa6.54□□□□□ -1.36
UPF2-203ENST00000397053 FCRL1Q96LA6 429 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms