RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 E5RGE8 158 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 SIX6O95475 246 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 TOR2AQ5JU69 321 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 ZDHHC23Q8IYP9 409 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 TGIF2Q9GZN2 237 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 S1PR5Q9H228 398 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 NSG2Q9Y328 171 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 COX7A2P2O60397 106 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 OR7C2O60412 319 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 CRYAAP02489 173 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 SPP1P10451 314 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 SLC25A6P12236 298 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 PTTG1IPP53801 180 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 BCDIN3DQ7Z5W3 292 aaKnown RBP11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 TVP23CQ96ET8 276 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 OXGR1Q96P68 337 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 TECTBQ96PL2 329 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 FBXO4Q9UKT5 387 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 FIGNL2A6NMB9 653 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 RAB5AP20339 215 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 MMP11P24347 488 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 ADPRHP54922 357 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 EXD3Q8N9H8 876 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 SLC16A11Q8NCK7 471 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 OLIG1Q8TAK6 271 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 TMEM230Q96A57 120 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 TEAD3Q99594 435 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 FAM103A1Q9BTL3 118 aaKnown RBP11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 CLEC2DQ9UHP7 191 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 DBX1A6NMT0 343 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 SUMO1P63165 101 aaKnown RBP11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 HAGHQ16775 308 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 TMEM102Q8N9M5 508 aaPredicted RBP11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 OR5M8Q8NGP6 311 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 PINX1Q96BK5 328 aaKnown RBP11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 EDEM2Q9BV94 578 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 SLC25A32Q9H2D1 315 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 AQP7P3A6NL99 342 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 RAB1AP62820 205 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 SHHQ15465 462 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 H3F3CQ6NXT2 135 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 ACOT7LQ6ZUV0 252 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 WFDC8Q8IUA0 241 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 LYSMD2Q8IV50 215 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 SLC37A2Q8TED4 501 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 ST8SIA1Q92185 356 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 ZDHHC16Q969W1 377 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 MED18Q9BUE0 208 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 KCNG2Q9UJ96 466 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 G3V3Q6 166 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 M0R135 149 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 CCSO14618 274 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 TERTO14746 1132 aaKnown RBP11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 DSCR3O14972 297 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 ZNF485Q8NCK3 441 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 ZNF799Q96GE5 643 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 NTN4Q9HB63 628 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 OR51B4Q9Y5P0 310 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 N4BP2Q86UW6 1770 aaPredicted RBP11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 LRRC3CA6NJW4 275 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 NTF3P20783 257 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 RFLNAQ6ZTI6 216 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 CDH26Q8IXH8 852 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 CMTM4Q8IZR5 234 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 BATF2Q8N1L9 274 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 ZFP62Q8NB50 900 aaPredicted RBP11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 TMEM174Q8WUU8 243 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 C19orf53Q9UNZ5 99 aaPredicted RBP11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 TIAM2Q8IVF5 1701 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 DCTN6O00399 190 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 FBP1P09467 338 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 DUSP8Q13202 625 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 BAK1Q16611 211 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 AGBL4Q5VU57 503 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 GPR78Q96P69 363 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 IGHV3-20A0A0C4DH32 117 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 PDGFAP04085 211 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 JUNBP17275 347 aaPredicted RBP11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 COX5AP20674 150 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 DRAM2Q6UX65 266 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 GABRG1Q8N1C3 465 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 NECAP1Q8NC96 275 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 GPX8Q8TED1 209 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 EMC6Q9BV81 110 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 CRLF2Q9HC73 371 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 ZNF346Q9UL40 294 aaKnown RBP11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 A3GALT2U3KPV4 340 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 PHIPQ8WWQ0 1821 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 TMEM265A0A087WTH1 108 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 NRG2O14511 850 aaPredicted RBP11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 TXNDC12O95881 172 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 SBK2P0C263 348 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 GPX2P18283 190 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 PCSK6P29122 969 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 RPUSD3Q6P087 351 aaKnown RBP11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 OR2T6Q8NHC8 308 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 MS4A6EQ96DS6 147 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 C1QTNF6Q9BXI9 259 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 FBXO34Q9NWN3 711 aa11.66□□□□□ -0.54
CCDC88C-204ENST00000389857 PSENENQ9NZ42 101 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms