RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 SHPKQ9UHJ6 478 aa14.25□□□□□ -0.13
HMGA1-202ENST00000347617 GOLGA4Q13439 2230 aaKnown RBP14.25□□□□□ -0.13
HMGA1-202ENST00000347617 C5orf52A6NGY3 159 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 COLCA2A8K830 154 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 M0QYG6 137 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 FGF17O60258 216 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 SLC35E2P0CK97 266 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 LYL1P12980 280 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 PTGFRP43088 359 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 IL13RA1P78552 427 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 PMPCAQ10713 525 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 EXOSC7Q15024 291 aaKnown RBP14.24□□□□□ -0.13
HMGA1-202ENST00000347617 LRRC37A5PQ49AS3 106 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 ALG10Q5BKT4 473 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 FAM209BQ5JX69 171 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 EEF1A1P5Q5VTE0 462 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 ZNF627Q7L945 461 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 ZAR1Q86SH2 424 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 BIVMQ86UB2 503 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 TMEM200AQ86VY9 491 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 OR4A4PQ8NGN8 299 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 OR6N2Q8NGY6 317 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 ZCCHC10Q8TBK6 192 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 NUDCD2Q8WVJ2 157 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 ZDHHC12Q96GR4 267 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 SLC6A7Q99884 636 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 SEC61A2Q9H9S3 476 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 SEBOXQ9HB31 216 aaPredicted RBP14.24□□□□□ -0.13
HMGA1-202ENST00000347617 ASH2LQ9UBL3 628 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 DHDHQ9UQ10 334 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 VSIG4Q9Y279 399 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 SCN2AQ99250 2005 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 ABCA7Q8IZY2 2146 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 TLCD2A6NGC4 264 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 DBX1A6NMT0 343 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 TAAR5O14804 337 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 LDLRAD4O15165 306 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 S100A6P06703 90 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 ZNF806P0C7X5 589 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 TDGF1P13385 188 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 CTXN1P60606 82 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 FAM53BQ14153 422 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 ATXN7L3Q14CW9 347 aaPredicted RBP14.24□□□□□ -0.13
HMGA1-202ENST00000347617 PLEKHN1Q494U1 663 aaPredicted RBP14.24□□□□□ -0.13
HMGA1-202ENST00000347617 SCGB2B2Q4G0G5 96 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 BEX5Q5H9J7 111 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 ZNF761Q86XN6 746 aaPredicted RBP14.24□□□□□ -0.13
HMGA1-202ENST00000347617 ZSCAN1Q8NBB4 408 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 NANPQ8TBE9 248 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 ADAMTS18Q8TE60 1221 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 RNF128Q8TEB7 428 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 DCUN1D4Q92564 292 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 C3orf49Q96BT1 292 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 SEC22AQ96IW7 307 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 SMIM8Q96KF7 97 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 OR8B4Q96RC9 309 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 NUDT16L1Q9BRJ7 211 aaKnown RBP14.24□□□□□ -0.13
HMGA1-202ENST00000347617 CRB3Q9BUF7 120 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 FAM60AQ9NP50 221 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 GSN-AS1Q9NRJ2 163 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 METTL1Q9UBP6 276 aaKnown RBP14.24□□□□□ -0.13
HMGA1-202ENST00000347617 SUSD2Q9UGT4 822 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 FBXO4Q9UKT5 387 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 PRUNE2Q8WUY3 3088 aa14.24□□□□□ -0.13
HMGA1-202ENST00000347617 OR6C76A6NM76 312 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 RHPN2P1A8MT19 583 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 LINC00587B1AMM8 73 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 MFNGO00587 321 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 CYR61O00622 381 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 FAM157CP0CG43 387 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 CCKBRP32239 447 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 GABRA4P48169 554 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 GSK3AP49840 483 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 PPP1CAP62136 330 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 PPP1R1AQ13522 171 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 HABP2Q14520 560 aaPredicted RBP14.23□□□□□ -0.13
HMGA1-202ENST00000347617 SLC17A1Q14916 467 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 ZNF74Q16587 644 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 DEFB133Q30KQ1 61 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 WDR38Q5JTN6 314 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 TMEM225Q6GV28 225 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 WBP2NLQ6ICG8 309 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 UNQ6126/PRO20091Q6UXV3 157 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 NKAIN3Q8N8D7 197 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 DTWD2Q8NBA8 298 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 OR10AC1Q8NH08 325 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 OTOSQ8NHW6 89 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 TUBA4BQ9H853 241 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 CYTL1Q9NRR1 136 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 SLC22A11Q9NSA0 550 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 SEMA5BQ9P283 1151 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 GRHPRQ9UBQ7 328 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 DNAJB11Q9UBS4 358 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 TMEM131Q92545 1883 aa14.23□□□□□ -0.13
HMGA1-202ENST00000347617 SERINC4A6NH21 518 aa14.22□□□□□ -0.13
HMGA1-202ENST00000347617 LINC01387J3KSC0 135 aa14.22□□□□□ -0.13
HMGA1-202ENST00000347617 WRBO00258 174 aa14.22□□□□□ -0.13
HMGA1-202ENST00000347617 CCSO14618 274 aa14.22□□□□□ -0.13
HMGA1-202ENST00000347617 EIF1BO60739 113 aaKnown RBP14.22□□□□□ -0.13
HMGA1-202ENST00000347617 ALOX12BO75342 701 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms