RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 MFSD4AQ8N468 514 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 RASD2Q96D21 266 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 MRPL38Q96DV4 380 aaKnown RBP12.2□□□□□ -0.46
COL6A3-202ENST00000347401 RAB6CQ9H0N0 254 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 MANBALQ9NQG1 85 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 SLC23A1Q9UHI7 598 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 PIGLQ9Y2B2 252 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 SSSCA1O60232 199 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 RPS23P62266 143 aaKnown RBP12.2□□□□□ -0.46
COL6A3-202ENST00000347401 PPP2CAP67775 309 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 C6orf132Q5T0Z8 1188 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 PRICKLE2Q7Z3G6 844 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 LMNTD1Q8N9Z9 388 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 RELTQ969Z4 430 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 TMED3Q9Y3Q3 217 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 CNMDO75829 334 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 GP1BAP07359 652 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 ELNP15502 786 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 TMPRSS11FQ6ZWK6 438 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 GDPD3Q7L5L3 318 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 GDF7Q7Z4P5 450 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 OR2M7Q8NG81 312 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 OR4D10Q8NGI6 311 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 OR5AR1Q8NGP9 310 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 YIPF6Q96EC8 236 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 EGLN1Q9GZT9 426 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 NXF5Q9H1B4 397 aaKnown RBP12.2□□□□□ -0.46
COL6A3-202ENST00000347401 ZNF236Q9UL36 1845 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 TCRBV21S2A2A0A5A6 115 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 CD46P15529 392 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 NME1P15531 152 aaKnown RBP12.2□□□□□ -0.46
COL6A3-202ENST00000347401 LCORQ96JN0 433 aaPredicted RBP12.2□□□□□ -0.46
COL6A3-202ENST00000347401 FGF20Q9NP95 211 aaPredicted RBP12.2□□□□□ -0.46
COL6A3-202ENST00000347401 HS3ST2Q9Y278 367 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 OR8G2PQ6IF36 304 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 ANGPTL5Q86XS5 388 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 TMEM229BQ8NBD8 167 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 ATG101Q9BSB4 218 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 RGPD3A6NKT7 1758 aaPredicted RBP12.2□□□□□ -0.46
COL6A3-202ENST00000347401 RGPD4Q7Z3J3 1758 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 UBE2IP63279 158 aaKnown RBP12.2□□□□□ -0.46
COL6A3-202ENST00000347401 TBC1D28Q2M2D7 210 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 BTNL3Q6UXE8 466 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 LRRTM1Q86UE6 522 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 C2CD4CQ8TF44 421 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 PPP1R1CQ8WVI7 109 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 HGDQ93099 445 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 TMEM218A2RU14 115 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 DEGS1O15121 323 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 MCATQ8IVS2 390 aaKnown RBP12.2□□□□□ -0.46
COL6A3-202ENST00000347401 ZIC5Q96T25 663 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 RHOFQ9HBH0 211 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 RBPJLQ9UBG7 517 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 LIPCP11150 499 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 ARNTP27540 789 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 FAM171A2A8MVW0 826 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 RBP2P50120 134 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 SPCS3P61009 180 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 DLK1P80370 383 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 ELOBQ15370 118 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 HSF5Q4G112 596 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-202ENST00000347401 VWA2Q5GFL6 755 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 C11orf87Q6NUJ2 197 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 BOD1Q96IK1 185 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 MRPL22Q9NWU5 206 aaKnown RBP12.19□□□□□ -0.46
COL6A3-202ENST00000347401 KLF8O95600 359 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-202ENST00000347401 SFTA3P0C7M3 94 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 NAT1P18440 290 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 TCTAP57738 103 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 H1FNTQ75WM6 255 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-202ENST00000347401 FAM71CQ8NEG0 241 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 OR5M11Q96RB7 305 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 PDLIM7Q9NR12 457 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 FKBP11Q9NYL4 201 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 OR6C76A6NM76 312 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 NTF3P20783 257 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 SDHAP31040 664 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 EXT1Q16394 746 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 HSD17B13Q7Z5P4 300 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-202ENST00000347401 VRK2Q86Y07 508 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 METTL27Q8N6F8 245 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-202ENST00000347401 THAP3Q8WTV1 239 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-202ENST00000347401 PCDHGA9Q9Y5G4 932 aaKnown RBP12.19□□□□□ -0.46
COL6A3-202ENST00000347401 NME2P1O60361 137 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 PKIAP61925 76 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 IL10RAQ13651 578 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 Q3ZCU0 254 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 ETFRF1Q6IPR1 90 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 GLDNQ6ZMI3 551 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-202ENST00000347401 GABRG1Q8N1C3 465 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 NEIL1Q96FI4 390 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-202ENST00000347401 PARD6AQ9NPB6 346 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 CYSLTR2Q9NS75 346 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 FOXJ3Q9UPW0 622 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 FAM74A7A6NL05 159 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 F3P13726 295 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 TNFRSF4P43489 277 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 GPR12P47775 334 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 SOWAHCQ53LP3 525 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-202ENST00000347401 SLCO4A1Q96BD0 722 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms