RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 LEUTXA8MZ59 168 aa13.73□□□□□ -0.21
UPF3B-202ENST00000345865 SIX6O95475 246 aa13.73□□□□□ -0.21
UPF3B-202ENST00000345865 RLN1P04808 185 aa13.73□□□□□ -0.21
UPF3B-202ENST00000345865 LAP3P28838 519 aa13.73□□□□□ -0.21
UPF3B-202ENST00000345865 SFTPDP35247 375 aa13.73□□□□□ -0.21
UPF3B-202ENST00000345865 TSPAN5P62079 268 aa13.73□□□□□ -0.21
UPF3B-202ENST00000345865 PCOLCEQ15113 449 aa13.73□□□□□ -0.21
UPF3B-202ENST00000345865 TOMM20Q15388 145 aa13.73□□□□□ -0.21
UPF3B-202ENST00000345865 C3orf33Q6P1S2 294 aa13.73□□□□□ -0.21
UPF3B-202ENST00000345865 UEVLDQ8IX04 471 aa13.73□□□□□ -0.21
UPF3B-202ENST00000345865 OR8H3Q8N146 312 aa13.73□□□□□ -0.21
UPF3B-202ENST00000345865 GABRG1Q8N1C3 465 aa13.73□□□□□ -0.21
UPF3B-202ENST00000345865 MAFAQ8NHW3 353 aaPredicted RBP13.73□□□□□ -0.21
UPF3B-202ENST00000345865 ELP5Q8TE02 316 aa13.73□□□□□ -0.21
UPF3B-202ENST00000345865 PCNPQ8WW12 178 aaKnown RBP13.73□□□□□ -0.21
UPF3B-202ENST00000345865 GAREM1Q9H706 876 aa13.73□□□□□ -0.21
UPF3B-202ENST00000345865 PTGES2Q9H7Z7 377 aa13.73□□□□□ -0.21
UPF3B-202ENST00000345865 CNTD2Q9H8S5 307 aa13.73□□□□□ -0.21
UPF3B-202ENST00000345865 GPN1Q9HCN4 374 aaPredicted RBP13.73□□□□□ -0.21
UPF3B-202ENST00000345865 RTTNQ86VV8 2226 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 A0A1W2PPL8 197 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 MEGF11A6BM72 1044 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 UBCP0CG48 685 aaKnown RBP13.72□□□□□ -0.21
UPF3B-202ENST00000345865 H2BFSP57053 126 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 OC90Q02509 493 aaPredicted RBP13.72□□□□□ -0.21
UPF3B-202ENST00000345865 EXOSC2Q13868 293 aaKnown RBP13.72□□□□□ -0.21
UPF3B-202ENST00000345865 CARD17Q5XLA6 110 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 RNF144BQ7Z419 303 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 ELMOD2Q8IZ81 293 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 MUC20Q8N307 709 aaPredicted RBP13.72□□□□□ -0.21
UPF3B-202ENST00000345865 GALNT16Q8N428 558 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 PAQR4Q8N4S7 273 aaPredicted RBP13.72□□□□□ -0.21
UPF3B-202ENST00000345865 OR10H5Q8NGA6 315 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 OR52N4Q8NGI2 321 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 SLC22A8Q8TCC7 542 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 SOX7Q9BT81 388 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 PBOV1Q9GZY1 135 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 PLSCR5A0PG75 271 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 NOS1APO75052 506 aaPredicted RBP13.72□□□□□ -0.21
UPF3B-202ENST00000345865 PDGFBP01127 241 aaPredicted RBP13.72□□□□□ -0.21
UPF3B-202ENST00000345865 GIPP09681 153 aaPredicted RBP13.72□□□□□ -0.21
UPF3B-202ENST00000345865 CXCL2P19875 107 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 PMPCAQ10713 525 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 GRK1Q15835 563 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 THEM4Q5T1C6 240 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 FADS6Q8N9I5 356 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 NOXO1Q8NFA2 376 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 OR1J2Q8NGS2 313 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 IFI44Q8TCB0 444 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 C1orf198Q9H425 327 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 SEC61A2Q9H9S3 476 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 PRDM6Q9NQX0 595 aa13.72□□□□□ -0.21
UPF3B-202ENST00000345865 GDF2Q9UK05 429 aaPredicted RBP13.72□□□□□ -0.21
UPF3B-202ENST00000345865 NCOA6Q14686 2063 aaPredicted RBP13.71□□□□□ -0.21
UPF3B-202ENST00000345865 TEX51A0A1B0GUA7 166 aa13.71□□□□□ -0.21
UPF3B-202ENST00000345865 PATE3B3GLJ2 98 aa13.71□□□□□ -0.21
UPF3B-202ENST00000345865 M0QYG6 137 aa13.71□□□□□ -0.21
UPF3B-202ENST00000345865 TNFRSF10AO00220 468 aa13.71□□□□□ -0.21
UPF3B-202ENST00000345865 LPLP06858 475 aa13.71□□□□□ -0.21
UPF3B-202ENST00000345865 CLRN1P58418 232 aa13.71□□□□□ -0.21
UPF3B-202ENST00000345865 TMEM176BQ3YBM2 270 aaPredicted RBP13.71□□□□□ -0.21
UPF3B-202ENST00000345865 Q7L0L9 218 aa13.71□□□□□ -0.21
UPF3B-202ENST00000345865 ACBD4Q8NC06 268 aa13.71□□□□□ -0.21
UPF3B-202ENST00000345865 RADILQ96JH8 1075 aa13.71□□□□□ -0.21
UPF3B-202ENST00000345865 TINAGL1Q9GZM7 467 aaPredicted RBP13.71□□□□□ -0.21
UPF3B-202ENST00000345865 C19orf25Q9UFG5 118 aaPredicted RBP13.71□□□□□ -0.21
UPF3B-202ENST00000345865 CNTRLQ7Z7A1 2325 aa13.71□□□□□ -0.22
UPF3B-202ENST00000345865 TMEM235A6NFC5 223 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 UMODP07911 640 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 FGF5P12034 268 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 UNC119Q13432 240 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 UXS1Q8NBZ7 420 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 NKD1Q969G9 470 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 CMBLQ96DG6 245 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 CDX2Q99626 313 aaPredicted RBP13.7□□□□□ -0.22
UPF3B-202ENST00000345865 KLK13Q9UKR3 277 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 A0A1B0GTI1 187 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 RPS10-NUDT3A0A1W2PQS6 291 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 SYT7O43581 403 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 IGHG1P01857 330 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 ITGB2P05107 769 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 CFIP05156 583 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 SLC2A1P11166 492 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 GNALP38405 381 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 CLDN6P56747 220 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 GPR85P60893 370 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 DHODHQ02127 395 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 SSBP1Q04837 148 aaKnown RBP13.7□□□□□ -0.22
UPF3B-202ENST00000345865 IKZF1Q13422 519 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 POU4F3Q15319 338 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 C1QTNF12Q5T7M4 302 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 DCAF12L2Q5VW00 463 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 B3GNTL1Q67FW5 361 aaPredicted RBP13.7□□□□□ -0.22
UPF3B-202ENST00000345865 SLC25A47Q6Q0C1 308 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 FAM198BQ6UWH4 519 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 ADPRHL1Q8NDY3 354 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 ZNF319Q9P2F9 582 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 PISDQ9UG56 409 aa13.7□□□□□ -0.22
UPF3B-202ENST00000345865 LINC00862A6NCI5 91 aa13.69□□□□□ -0.22
UPF3B-202ENST00000345865 MASP2O00187 686 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 476.1 ms