RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 H2AFY2Q9P0M6 372 aaPredicted RBP13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 DUSP13Q9UII6 198 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 PMF1-BGLAPU3KQ54 211 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 TMEM129A0AVI4 362 aa13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 F5H5K5 113 aa13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 ICMTO60725 284 aa13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 NGFP01138 241 aa13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 MRPL3P09001 348 aaKnown RBP13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 PAX1P15863 534 aa13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 NXNL2Q5VZ03 156 aa13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 SPATC1Q76KD6 591 aa13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 SHFQ7M4L6 423 aa13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 SYNPRQ8TBG9 265 aa13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 SLC25A40Q8TBP6 338 aa13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 ST7LQ8TDW4 575 aa13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 SLAMF6Q96DU3 332 aa13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 HRASLS5Q96KN8 279 aa13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 DCLRE1CQ96SD1 692 aaKnown RBP13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 TEAD3Q99594 435 aa13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 COPS4Q9BT78 406 aa13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 CXXC4Q9H2H0 198 aa13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 DCLRE1BQ9H816 532 aa13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 DYNLRB1Q9NP97 96 aa13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 CENPMQ9NSP4 180 aa13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 MYEF2Q9P2K5 600 aaKnown RBP13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 MYO9AB2RTY4 2548 aa13.66□□□□□ -0.22
CCDC28A-201ENST00000332797 A0A1W2PPW3 197 aa13.65□□□□□ -0.22
CCDC28A-201ENST00000332797 CLPTM1O96005 669 aa13.65□□□□□ -0.22
CCDC28A-201ENST00000332797 KLF3P57682 345 aaPredicted RBP13.65□□□□□ -0.22
CCDC28A-201ENST00000332797 TAF13Q15543 124 aa13.65□□□□□ -0.22
CCDC28A-201ENST00000332797 AADACL4Q5VUY2 407 aa13.65□□□□□ -0.22
CCDC28A-201ENST00000332797 MEPCEQ7L2J0 689 aaKnown RBP13.65□□□□□ -0.22
CCDC28A-201ENST00000332797 GID4Q8IVV7 300 aa13.65□□□□□ -0.22
CCDC28A-201ENST00000332797 OR8J1Q8NGP2 316 aa13.65□□□□□ -0.22
CCDC28A-201ENST00000332797 VRK1Q99986 396 aaPredicted RBP13.65□□□□□ -0.22
CCDC28A-201ENST00000332797 OR2J1Q9GZK6 312 aa13.65□□□□□ -0.22
CCDC28A-201ENST00000332797 DDX28Q9NUL7 540 aaKnown RBP13.65□□□□□ -0.22
CCDC28A-201ENST00000332797 TBCCD1Q9NVR7 557 aa13.65□□□□□ -0.22
CCDC28A-201ENST00000332797 DNAJC27Q9NZQ0 273 aa13.65□□□□□ -0.22
CCDC28A-201ENST00000332797 GMPPBQ9Y5P6 360 aa13.65□□□□□ -0.22
CCDC28A-201ENST00000332797 MAP1AP78559 2803 aaPredicted RBP13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 SLC22A31A6NKX4 558 aa13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 ZNF878C9JN71 531 aa13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 H0YHG0 523 aa13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 H7C417 338 aa13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 NDUFS7O75251 213 aa13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 ZNF250P15622 560 aa13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 GCH1P30793 250 aa13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 EVX1P49640 407 aa13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 RGS6P49758 472 aa13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 SELENOVP59797 346 aa13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 MAD2L1BPQ15013 274 aaPredicted RBP13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 TESK1Q15569 626 aa13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 RSPO1Q2MKA7 263 aaPredicted RBP13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 ZNF718Q3SXZ3 478 aa13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 Q5PR19 223 aa13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 SLC16A9Q7RTY1 509 aa13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 C1orf174Q8IYL3 243 aa13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 OTOSQ8NHW6 89 aa13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 SPTSSAQ969W0 71 aa13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 MARS2Q96GW9 593 aaKnown RBP13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 CNN2Q99439 309 aaKnown RBP13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 DOK1Q99704 481 aa13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 ABHD6Q9BV23 337 aa13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 POFUT1Q9H488 388 aa13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 SMPD3Q9NY59 655 aaPredicted RBP13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 NKX1-2Q9UD57 310 aaPredicted RBP13.64□□□□□ -0.23
CCDC28A-201ENST00000332797 E9PQ18 207 aa13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 M0R135 149 aa13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 IGHV4-39P01824 125 aa13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 LYNP07948 512 aa13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 ACSM4P0C7M7 580 aa13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 MPV17P39210 176 aa13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 ALDH3B1P43353 468 aa13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 SLC6A9P48067 706 aa13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 PPOXP50336 477 aa13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 TPTEP56180 551 aa13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 NKPD1Q17RQ9 610 aa13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 ALKBH6Q3KRA9 238 aa13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 KRTAP27-1Q3LI81 207 aa13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 PACRGLQ8N7B6 248 aa13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 ZNF454Q8N9F8 522 aa13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 KLF14Q8TD94 323 aaPredicted RBP13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 THEM6Q8WUY1 208 aa13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 IPCEF1Q8WWN9 437 aaPredicted RBP13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 UBE2FQ969M7 185 aa13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 ZNF799Q96GE5 643 aa13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 ZNF582Q96NG8 517 aaPredicted RBP13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 AMELYQ99218 206 aa13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 C8orf4Q9NR00 106 aa13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 TAAR3PQ9P1P4 343 aa13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 FBXO9Q9UK97 447 aaPredicted RBP13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 STARD10Q9Y365 291 aa13.63□□□□□ -0.23
CCDC28A-201ENST00000332797 IGLV3-9A0A075B6K5 115 aa13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 LOC100130705A0A1B0GUX0 176 aa13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 M0R233 179 aa13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 CASQ2O14958 399 aaPredicted RBP13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 ADRA2AP08913 450 aa13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 HCCSP53701 268 aa13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 GGTLC2Q14390 218 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms