RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 CLEC9AQ6UXN8 241 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 ZNF765Q7L2R6 523 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 TRAPPC6BQ86SZ2 158 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 C7orf61Q8IZ16 206 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 OR52R1Q8NGF1 315 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 KLHDC3Q9BQ90 382 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 NRSN2Q9GZP1 204 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 C8orf33Q9H7E9 229 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 B9D1Q9UPM9 204 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 F5P12259 2224 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 RTTNQ86VV8 2226 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 A0A1W2PPE2 198 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 FAM157AC9JC47 383 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 ARPC3O15145 178 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 OIP5O43482 229 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 HLA-DQA2P01906 255 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 MFGE8Q08431 387 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 CHAF1BQ13112 559 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 PYY3Q5JQD4 70 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 TMEM225Q6GV28 225 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 FAM166AQ6J272 317 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 FRMD1Q8N878 549 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 EXD3Q8N9H8 876 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 OR2I1PQ8NGU4 316 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 TCTEX1D2Q8WW35 142 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 ZNF524Q96C55 264 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 MARS2Q96GW9 593 aaKnown RBP12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 DCBLD2Q96PD2 775 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 MYOZ1Q9NP98 299 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 POLE3Q9NRF9 147 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 GSKIPQ9P0R6 139 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 LRIT1Q9P2V4 623 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 A0A1B0GV50 99 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 CTSVO60911 334 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 IL2RAP01589 272 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 MT-ND4LP03901 98 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 CD2P06729 351 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 HLA-GP17693 338 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 RAB5AP20339 215 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 MARCH3Q86UD3 253 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 ADAMTS17Q8TE56 1095 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 SMIM3Q9BZL3 60 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 RAB33BQ9H082 229 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 CRISPLD2Q9H0B8 497 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 STARD5Q9NSY2 213 aa12.08□□□□□ -0.48
CCDC88C-201ENST00000331194 EML2O95834 649 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 AK1P00568 194 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 RAB6AP20340 208 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 PSG6Q00889 435 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 PRICKLE4Q2TBC4 344 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 TMEM244Q5VVB8 128 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 UNQ6494/PRO21346Q6UXR6 183 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 C12orf76Q8N812 135 aaPredicted RBP12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 ZNF383Q8NA42 475 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 OR4C3Q8NH37 302 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 GAL3ST3Q96A11 431 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 SMIM8Q96KF7 97 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 DMDP11532 3685 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 IGKV1D-42A0A075B6H8 117 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 A0A087WV62 115 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 IFITM10A6NMD0 228 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 DBX1A6NMT0 343 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 K7EQS6 105 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 TMEM127O75204 238 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 CISD3P0C7P0 127 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 GNB3P16520 340 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 GSK3AP49840 483 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 MGAT2Q10469 447 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 ITPRIPL2Q3MIP1 535 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 MESTQ5EB52 335 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 TTLL10Q6ZVT0 673 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 OR4D6Q8NGJ1 314 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 OR8D1Q8WZ84 308 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 RAB7BQ96AH8 199 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 SSX3Q99909 188 aa12.07□□□□□ -0.48
CCDC88C-201ENST00000331194 A0A087WUJ7 227 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 AP4M1O00189 453 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 MOSPD3O75425 235 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 MAOAP21397 527 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 CMPK1P30085 196 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 CCR4P51679 360 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 ADPRHP54922 357 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 DHCR24Q15392 516 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 ALG10Q5BKT4 473 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 ZNF550Q7Z398 422 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 OR10C1Q96KK4 312 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 TOX2Q96NM4 488 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 TGIF2Q9GZN2 237 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 CXorf65A6NEN9 183 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 METTL12A8MUP2 240 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 CEBPBP17676 345 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 TACR3P29371 465 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 TLX1P31314 330 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 CTNNB1P35222 781 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 HTR5AP47898 357 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 S100A10P60903 97 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 NAAAQ02083 359 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 RAB32Q13637 225 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 OR2A2Q6IF42 318 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 POMZP3Q6PJE2 187 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms