RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 APOOLQ6UXV4 268 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 Q6ZTK2 550 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 SLC16A14Q7RTX9 510 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 UBE3DQ7Z6J8 389 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 WDR31Q8NA23 367 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 OR5A2Q8NGI9 324 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 OR4C12Q96R67 309 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 GDE1Q9NZC3 331 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 METTL1Q9UBP6 276 aaKnown RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 CA14Q9ULX7 337 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 TRAV18A0A075B6X5 111 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 MSTNO14793 375 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 SRMP19623 302 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 BCL6P41182 706 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 SLC11A1P49279 550 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 RAB9AP51151 201 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 HYAL2Q12891 473 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 Q6ZRG5 221 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 TECPR1Q7Z6L1 1165 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 YRDCQ86U90 279 aaKnown RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 HSD17B11Q8NBQ5 300 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 OR52B6Q8NGF0 335 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 MRPL38Q96DV4 380 aaKnown RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 MENTQ9BUN1 341 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 POLR2AP24928 1970 aaKnown RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 CPMP14384 443 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 PMCHP20382 165 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 VAMP3Q15836 100 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 SLC5A12Q1EHB4 618 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 ARHGAP11BQ3KRB8 267 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 GLYR1Q49A26 553 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 RTL8AQ9BWD3 113 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 MS4A8Q9BY19 250 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 C19orf53Q9UNZ5 99 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 SLC5A6Q9Y289 635 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 CARHSP1Q9Y2V2 147 aaKnown RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 ACACAQ13085 2346 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF840PA6NDX5 716 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 WTIPA6NIX2 430 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 IQCF5A8MTL0 148 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 KCNQ2O43526 872 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 ITGB4P16144 1822 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 EN2P19622 333 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 GJA5P36382 358 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 TAS2R45P59539 299 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 PAFAH1B2P68402 229 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 ACY1Q03154 408 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 ALKBH1Q13686 389 aaKnown RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 MEX3BQ6ZN04 569 aaKnown RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 KMT5CQ86Y97 462 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 CSNK1A1LQ8N752 337 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 ZBTB34Q8NCN2 500 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 TOE1Q96GM8 510 aaKnown RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 SENP5Q96HI0 755 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 DCBLD2Q96PD2 775 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 HDAC8Q9BY41 377 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 IKZF5Q9H5V7 419 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 TMEFF2Q9UIK5 374 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-201ENST00000303395 LHX6Q9UPM6 363 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 ARL2-SNX15V9GYD0 113 aa4.81□□□□□ -1.64
SCN1A-201ENST00000303395 BMPR1BO00238 502 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 TIMM8AO60220 97 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-201ENST00000303395 CD37P11049 281 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 DSC1Q08554 894 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 NOGQ13253 232 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 ACSF3Q4G176 576 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-201ENST00000303395 AMMECR1LQ6DCA0 310 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF343Q6P1L6 599 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 OGFOD3Q6PK18 319 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 SSX7Q7RTT5 188 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 MRGPREQ86SM8 312 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 SLC38A6Q8IZM9 456 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 OR52I1Q8NGK6 324 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 SPSB1Q96BD6 273 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 WDR92Q96MX6 357 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 IER2Q9BTL4 223 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 OCEL1Q9H607 264 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 FBXL12Q9NXK8 326 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF256Q9Y2P7 627 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-201ENST00000303395 TRAV36DV7A0A075B6V5 113 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 TEX50A0A1B0GTY4 177 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF785A8K8V0 405 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 TRDCB7Z8K6 153 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 KLRC4-KLRK1H3BQV0 150 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 GALTP07902 379 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 GABRA1P14867 456 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 BTF3P20290 206 aaKnown RBP4.8□□□□□ -1.64
SCN1A-201ENST00000303395 RRADP55042 308 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 SHHQ15465 462 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 NSDHLQ15738 373 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 PRSS54Q6PEW0 395 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 LYPD4Q6UWN0 246 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 FBXW12Q6X9E4 464 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 FAM219AQ8IW50 185 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 C9orf62Q8N4C0 152 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 NPWQ8N729 165 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF596Q8TC21 504 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 PRR11Q96HE9 360 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-201ENST00000303395 NECAP2Q9NVZ3 263 aa4.8□□□□□ -1.64
SCN1A-201ENST00000303395 RASL12Q9NYN1 266 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms