RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 RGS21Q2M5E4 152 aa14.52□□□□□ -0.08
USP4-201ENST00000265560 PYDC2Q56P42 97 aa14.52□□□□□ -0.08
USP4-201ENST00000265560 KLHL24Q6TFL4 600 aa14.52□□□□□ -0.08
USP4-201ENST00000265560 GCNT2Q8N0V5 402 aa14.52□□□□□ -0.08
USP4-201ENST00000265560 PLPP7Q8NBV4 271 aa14.52□□□□□ -0.08
USP4-201ENST00000265560 SNIP1Q8TAD8 396 aaKnown RBP14.52□□□□□ -0.08
USP4-201ENST00000265560 ZNF671Q8TAW3 534 aa14.52□□□□□ -0.08
USP4-201ENST00000265560 NELFAQ9H3P2 528 aa14.52□□□□□ -0.08
USP4-201ENST00000265560 SLC7A10Q9NS82 523 aa14.52□□□□□ -0.08
USP4-201ENST00000265560 MYEF2Q9P2K5 600 aaKnown RBP14.52□□□□□ -0.08
USP4-201ENST00000265560 LOC107986453A0A1B0GWG9 222 aa14.52□□□□□ -0.08
USP4-201ENST00000265560 SYNGR4O95473 234 aa14.52□□□□□ -0.08
USP4-201ENST00000265560 ADRB1P08588 477 aa14.52□□□□□ -0.08
USP4-201ENST00000265560 SLC6A9P48067 706 aa14.52□□□□□ -0.08
USP4-201ENST00000265560 PDSS1Q5T2R2 415 aa14.52□□□□□ -0.08
USP4-201ENST00000265560 LYSMD2Q8IV50 215 aa14.52□□□□□ -0.08
USP4-201ENST00000265560 OR51A2Q8NGJ7 313 aa14.52□□□□□ -0.08
USP4-201ENST00000265560 OR51E1Q8TCB6 317 aa14.52□□□□□ -0.08
USP4-201ENST00000265560 PNRC2Q9NPJ4 139 aaKnown RBP14.52□□□□□ -0.08
USP4-201ENST00000265560 DDX28Q9NUL7 540 aaKnown RBP14.52□□□□□ -0.08
USP4-201ENST00000265560 TAF4O00268 1085 aa14.52□□□□□ -0.09
USP4-201ENST00000265560 GPR171O14626 319 aa14.52□□□□□ -0.09
USP4-201ENST00000265560 ZNF121P58317 390 aaPredicted RBP14.52□□□□□ -0.09
USP4-201ENST00000265560 BCL2L15Q5TBC7 163 aa14.52□□□□□ -0.09
USP4-201ENST00000265560 LINC00299Q6ZSB3 139 aa14.52□□□□□ -0.09
USP4-201ENST00000265560 FAM57BQ71RH2 274 aa14.52□□□□□ -0.09
USP4-201ENST00000265560 ZNF283Q8N7M2 679 aa14.52□□□□□ -0.09
USP4-201ENST00000265560 ASB5Q8WWX0 329 aa14.52□□□□□ -0.09
USP4-201ENST00000265560 TAAR6Q96RI8 345 aa14.52□□□□□ -0.09
USP4-201ENST00000265560 GAL3ST1Q99999 423 aa14.52□□□□□ -0.09
USP4-201ENST00000265560 PLEK2Q9NYT0 353 aa14.52□□□□□ -0.09
USP4-201ENST00000265560 ADGRG4Q8IZF6 3080 aa14.52□□□□□ -0.09
USP4-201ENST00000265560 ZNF254O75437 659 aa14.51□□□□□ -0.09
USP4-201ENST00000265560 TTRP02766 147 aa14.51□□□□□ -0.09
USP4-201ENST00000265560 ANXA2P07355 339 aaKnown RBP14.51□□□□□ -0.09
USP4-201ENST00000265560 PLA2G7Q13093 441 aa14.51□□□□□ -0.09
USP4-201ENST00000265560 NUFIP2Q7Z417 695 aaKnown RBP14.51□□□□□ -0.09
USP4-201ENST00000265560 POC5Q8NA72 575 aa14.51□□□□□ -0.09
USP4-201ENST00000265560 AKR7LQ8NHP1 331 aa14.51□□□□□ -0.09
USP4-201ENST00000265560 PBOV1Q9GZY1 135 aa14.51□□□□□ -0.09
USP4-201ENST00000265560 FAM206AQ9NX38 181 aa14.51□□□□□ -0.09
USP4-201ENST00000265560 EXTL2Q9UBQ6 330 aa14.51□□□□□ -0.09
USP4-201ENST00000265560 MCTS1Q9ULC4 181 aaKnown RBP14.51□□□□□ -0.09
USP4-201ENST00000265560 SMG1Q96Q15 3661 aaKnown RBP14.51□□□□□ -0.09
USP4-201ENST00000265560 TRAV1-2A0A0B4J238 106 aa14.51□□□□□ -0.09
USP4-201ENST00000265560 TRBV5-5A0A0J9YX44 114 aa14.51□□□□□ -0.09
USP4-201ENST00000265560 DNPH1O43598 174 aa14.51□□□□□ -0.09
USP4-201ENST00000265560 ACSM4P0C7M7 580 aa14.51□□□□□ -0.09
USP4-201ENST00000265560 HYAL4Q2M3T9 481 aa14.51□□□□□ -0.09
USP4-201ENST00000265560 SFRP5Q5T4F7 317 aa14.51□□□□□ -0.09
USP4-201ENST00000265560 METAP1DQ6UB28 335 aaPredicted RBP14.51□□□□□ -0.09
USP4-201ENST00000265560 PAMR1Q6UXH9 720 aa14.51□□□□□ -0.09
USP4-201ENST00000265560 OR13C3Q8NGS6 347 aa14.51□□□□□ -0.09
USP4-201ENST00000265560 LGALS14Q8TCE9 139 aa14.51□□□□□ -0.09
USP4-201ENST00000265560 WDYHV1Q96HA8 205 aa14.51□□□□□ -0.09
USP4-201ENST00000265560 TAS2R4Q9NYW5 299 aa14.51□□□□□ -0.09
USP4-201ENST00000265560 DHDHQ9UQ10 334 aa14.51□□□□□ -0.09
USP4-201ENST00000265560 A0A0G2JMP0 313 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 A0A0X1KG70 313 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 NOTOA8MTQ0 251 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 ZNF878C9JN71 531 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 ZNF84P51523 738 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 SPOCK1Q08629 439 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 C10orf128Q5T292 105 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 TPRA1Q86W33 373 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 OR4M2Q8NGB6 313 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 PNPLA2Q96AD5 504 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 ZNF774Q6NX45 483 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 DCDC5Q6ZRR9 648 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 TEX19Q8NA77 164 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 OR4M1Q8NGD0 313 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 FGGYQ96C11 551 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 FAM71F1Q96KD3 344 aaPredicted RBP14.5□□□□□ -0.09
USP4-201ENST00000265560 ZDHHC11Q9H8X9 412 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 ACKR4Q9NPB9 350 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 ETV6P41212 452 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 CX3CR1P49238 355 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 EVX1P49640 407 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 TRIM16LQ309B1 348 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 GCDHQ92947 438 aaPredicted RBP14.5□□□□□ -0.09
USP4-201ENST00000265560 LIN7BQ9HAP6 207 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 GPR35Q9HC97 309 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 CGGBP1Q9UFW8 167 aaPredicted RBP14.5□□□□□ -0.09
USP4-201ENST00000265560 V9GY05 133 aa14.5□□□□□ -0.09
USP4-201ENST00000265560 TRAV17A0A0B4J275 112 aa14.49□□□□□ -0.09
USP4-201ENST00000265560 ANXA2P2A6NMY6 339 aa14.49□□□□□ -0.09
USP4-201ENST00000265560 CD1AP06126 327 aa14.49□□□□□ -0.09
USP4-201ENST00000265560 GNALP38405 381 aa14.49□□□□□ -0.09
USP4-201ENST00000265560 FAPQ12884 760 aa14.49□□□□□ -0.09
USP4-201ENST00000265560 RSPO1Q2MKA7 263 aaPredicted RBP14.49□□□□□ -0.09
USP4-201ENST00000265560 MZT2AQ6P582 158 aa14.49□□□□□ -0.09
USP4-201ENST00000265560 ABHD12BQ7Z5M8 362 aaPredicted RBP14.49□□□□□ -0.09
USP4-201ENST00000265560 MCEMP1Q8IX19 187 aa14.49□□□□□ -0.09
USP4-201ENST00000265560 SPACA5Q96QH8 159 aa14.49□□□□□ -0.09
USP4-201ENST00000265560 SRRQ9GZT4 340 aa14.49□□□□□ -0.09
USP4-201ENST00000265560 IFITM5A6NNB3 132 aa14.49□□□□□ -0.09
USP4-201ENST00000265560 SPNP16150 400 aa14.49□□□□□ -0.09
USP4-201ENST00000265560 CCR9P51686 369 aa14.49□□□□□ -0.09
USP4-201ENST00000265560 PPP3R1P63098 170 aa14.49□□□□□ -0.09
USP4-201ENST00000265560 FDX2Q6P4F2 183 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms