RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 C6P13671 934 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 ATF1P18846 271 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 SUB1P53999 127 aaKnown RBP eCLIP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 KLF9Q13886 244 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 Q6ZN92 141 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF551Q7Z340 670 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 ERASQ7Z444 233 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 CBLN2Q8IUK8 224 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 LHX3Q9UBR4 397 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 SLC16A7O60669 478 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 APODP05090 189 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 HIST1H1BP16401 226 aaKnown RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 SLC6A11P48066 632 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 HOXC5Q00444 222 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 C1QL4Q86Z23 238 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 KCND3Q9UK17 655 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 TMEM269A0A1B0GVZ9 245 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 A0A1W2PPH5 198 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 ACAA1P09110 424 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 PMELP40967 661 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 GALR1P47211 349 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 CASP9P55211 416 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 BSXQ3C1V8 233 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 H1FOOQ8IZA3 346 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 CYB5R3P00387 301 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 TBXA2RP21731 343 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 KIR2DS3Q14952 304 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 HSF5Q4G112 596 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 RPS26P11Q5JNZ5 115 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 PIP5KL1Q5T9C9 394 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 DEGS2Q6QHC5 323 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 PLXDC2Q6UX71 529 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 GDF7Q7Z4P5 450 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 SLC25A42Q86VD7 318 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 OSTM1Q86WC4 334 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 PRR22Q8IZ63 422 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF687Q8N1G0 1237 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 TIMM29Q9BSF4 260 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 PRTFDC1Q9NRG1 225 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 CPA4Q9UI42 421 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 NPIPB15A6NHN6 443 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 HSPB1P04792 205 aaKnown RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 OR10J4P0C629 311 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 CPMP14384 443 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 SLC25A1P53007 311 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 RAB38P57729 211 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 OGFOD3Q6PK18 319 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 CD200R1LQ6Q8B3 271 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 SLCO4C1Q6ZQN7 724 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 HHIPQ96QV1 700 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 CALHM2Q9HA72 323 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 FAM206AQ9NX38 181 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 KCNE5Q9UJ90 142 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 KIF13BQ9NQT8 1826 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 NPIPA3F8WFD2 350 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 IGFBP1P08833 259 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 KLF3P57682 345 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 ERV3-1Q14264 604 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 CST9LP1Q5W188 147 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 RPL7L1Q6DKI1 246 aaKnown RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 FAM24BQ8N5W8 94 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 OR5AU1Q8NGC0 362 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 NUBPLQ8TB37 319 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 C11orf84Q9BUA3 381 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 FBXO34Q9NWN3 711 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 P4HTMQ9NXG6 502 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 RALYQ9UKM9 306 aaKnown RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 TBX21Q9UL17 535 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 FAM183AA6NL82 134 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 HAND1O96004 215 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 DGKEP52429 567 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 HNRNPKP61978 463 aaKnown RBP eCLIP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 EIF3IQ13347 325 aaKnown RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF789Q5FWF6 425 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 DLK2Q6UY11 383 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 LRRTM1Q86UE6 522 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 LRP11Q86VZ4 500 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 TGIF2LYQ8IUE0 185 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 TMEM183AQ8IXX5 376 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 TINAGL1Q9GZM7 467 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 ING1Q9UK53 422 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 TRAV36DV7A0A075B6V5 113 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 OR6C76A6NM76 312 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 QDPRP09417 244 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 CSNK1G2P78368 415 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 C9orf135Q5VTT2 229 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 AMIGO3Q86WK7 504 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 KLHDC8AQ8IYD2 350 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 MAML2Q8IZL2 1156 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-220ENST00000641603 OR52R1Q8NGF1 315 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 BOD1Q96IK1 185 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 LCORQ96JN0 433 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-220ENST00000641603 SLC25A37Q9NYZ2 338 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 CDS2O95674 445 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 SOD2P04179 222 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 MMP16P51512 607 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 DMWDQ09019 674 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 PCNPQ8WW12 178 aaKnown RBP4.26□□□□□ -1.73
SCN1A-220ENST00000641603 ELOVL3Q9HB03 270 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 MANSC4A6NHS7 340 aaPredicted RBP4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms