RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 C4orf45Q96LM5 186 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 PRSS50Q9UI38 385 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 FBXL3Q9UKT7 428 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 GSTK1Q9Y2Q3 226 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 R4GMQ9 66 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 FIGNL2A6NMB9 653 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 CD8BP10966 210 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 SERPINB10P48595 397 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 ARF1P84077 181 aaKnown RBP16.18■□□□□ 0.18
CLN3-254ENST00000637050 MFGE8Q08431 387 aaPredicted RBP16.18■□□□□ 0.18
CLN3-254ENST00000637050 FBXW9Q5XUX1 488 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 SEM1Q6ZVN7 128 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 ABHD12BQ7Z5M8 362 aaPredicted RBP16.18■□□□□ 0.18
CLN3-254ENST00000637050 CD163Q86VB7 1156 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 UBE2J2Q8N2K1 259 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 DRAXINQ8NBI3 349 aaPredicted RBP16.18■□□□□ 0.18
CLN3-254ENST00000637050 OR5AK2Q8NH90 309 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 KCTD7Q96MP8 289 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 SLC25A18Q9H1K4 315 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 KCNN2Q9H2S1 579 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 DDX28Q9NUL7 540 aaKnown RBP16.18■□□□□ 0.18
CLN3-254ENST00000637050 ZNF281Q9Y2X9 895 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 EMC9Q9Y3B6 208 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 ATMQ13315 3056 aa16.17■□□□□ 0.18
CLN3-254ENST00000637050 SERPINA3P01011 423 aa16.17■□□□□ 0.18
CLN3-254ENST00000637050 KIR2DL2P43627 348 aaPredicted RBP16.17■□□□□ 0.18
CLN3-254ENST00000637050 KIR3DL2P43630 455 aa16.17■□□□□ 0.18
CLN3-254ENST00000637050 FOXG1P55316 489 aaPredicted RBP16.17■□□□□ 0.18
CLN3-254ENST00000637050 FAPQ12884 760 aa16.17■□□□□ 0.18
CLN3-254ENST00000637050 YIF1BQ5BJH7 314 aa16.17■□□□□ 0.18
CLN3-254ENST00000637050 WDR38Q5JTN6 314 aa16.17■□□□□ 0.18
CLN3-254ENST00000637050 ZNF813Q6ZN06 617 aa16.17■□□□□ 0.18
CLN3-254ENST00000637050 SYT9Q86SS6 491 aa16.17■□□□□ 0.18
CLN3-254ENST00000637050 CATSPERDQ86XM0 798 aa16.17■□□□□ 0.18
CLN3-254ENST00000637050 TSC22D3Q99576 134 aa16.17■□□□□ 0.18
CLN3-254ENST00000637050 NIPAL2Q9H841 368 aa16.17■□□□□ 0.18
CLN3-254ENST00000637050 ASF1BQ9NVP2 202 aa16.17■□□□□ 0.18
CLN3-254ENST00000637050 FAM215AQ9Y5M1 114 aa16.17■□□□□ 0.18
CLN3-254ENST00000637050 MED12LQ86YW9 2145 aa16.17■□□□□ 0.18
CLN3-254ENST00000637050 TMEM212A6NML5 194 aa16.16■□□□□ 0.18
CLN3-254ENST00000637050 DVL2O14641 736 aa16.16■□□□□ 0.18
CLN3-254ENST00000637050 HOXD4P09016 255 aaPredicted RBP16.16■□□□□ 0.18
CLN3-254ENST00000637050 ABOP16442 354 aa16.16■□□□□ 0.18
CLN3-254ENST00000637050 MMP16P51512 607 aa16.16■□□□□ 0.18
CLN3-254ENST00000637050 KLRB1Q12918 225 aa16.16■□□□□ 0.18
CLN3-254ENST00000637050 ACSM3Q53FZ2 586 aa16.16■□□□□ 0.18
CLN3-254ENST00000637050 CCDC92Q53HC0 331 aaPredicted RBP16.16■□□□□ 0.18
CLN3-254ENST00000637050 PRR30Q53SZ7 412 aaPredicted RBP16.16■□□□□ 0.18
CLN3-254ENST00000637050 C1orf185Q5T7R7 199 aa16.16■□□□□ 0.18
CLN3-254ENST00000637050 ZNF544Q6NX49 715 aa16.16■□□□□ 0.18
CLN3-254ENST00000637050 KLHL24Q6TFL4 600 aa16.16■□□□□ 0.18
CLN3-254ENST00000637050 TFAP2EQ6VUC0 442 aa16.16■□□□□ 0.18
CLN3-254ENST00000637050 SKA3Q8IX90 412 aa16.16■□□□□ 0.18
CLN3-254ENST00000637050 IL17RDQ8NFM7 739 aa16.16■□□□□ 0.18
CLN3-254ENST00000637050 OR13C5Q8NGS8 318 aa16.16■□□□□ 0.18
CLN3-254ENST00000637050 RGP1Q92546 391 aaPredicted RBP16.16■□□□□ 0.18
CLN3-254ENST00000637050 WACQ9BTA9 647 aa16.16■□□□□ 0.18
CLN3-254ENST00000637050 BOD1L1Q8NFC6 3051 aa16.16■□□□□ 0.18
CLN3-254ENST00000637050 TMEM269A0A1B0GVZ9 245 aa16.15■□□□□ 0.18
CLN3-254ENST00000637050 FARS2O95363 451 aaKnown RBP16.15■□□□□ 0.18
CLN3-254ENST00000637050 CTSSP25774 331 aa16.15■□□□□ 0.18
CLN3-254ENST00000637050 GRB2P62993 217 aaKnown RBP16.15■□□□□ 0.18
CLN3-254ENST00000637050 ZNF829Q3KNS6 432 aaPredicted RBP16.15■□□□□ 0.18
CLN3-254ENST00000637050 ELFN2Q5R3F8 820 aa16.15■□□□□ 0.18
CLN3-254ENST00000637050 UNQ9370/PRO34162Q6UXP9 181 aa16.15■□□□□ 0.18
CLN3-254ENST00000637050 OR6K3Q8NGY3 331 aa16.15■□□□□ 0.18
CLN3-254ENST00000637050 DACH2Q96NX9 599 aa16.15■□□□□ 0.18
CLN3-254ENST00000637050 G6PC2Q9NQR9 355 aa16.15■□□□□ 0.18
CLN3-254ENST00000637050 FAM206AQ9NX38 181 aa16.15■□□□□ 0.18
CLN3-254ENST00000637050 GALNT8Q9NY28 637 aa16.15■□□□□ 0.18
CLN3-254ENST00000637050 ARHGAP21Q5T5U3 1957 aa16.15■□□□□ 0.18
CLN3-254ENST00000637050 LOC110117498-PIK3R3F6TDL0 507 aa16.14■□□□□ 0.18
CLN3-254ENST00000637050 MPGP29372 298 aa16.14■□□□□ 0.18
CLN3-254ENST00000637050 RPS19P39019 145 aaKnown RBP16.14■□□□□ 0.18
CLN3-254ENST00000637050 PCBD1P61457 104 aa16.14■□□□□ 0.18
CLN3-254ENST00000637050 SCRN3Q0VDG4 424 aa16.14■□□□□ 0.18
CLN3-254ENST00000637050 LSAMPQ13449 338 aa16.14■□□□□ 0.18
CLN3-254ENST00000637050 TAF13Q15543 124 aa16.14■□□□□ 0.18
CLN3-254ENST00000637050 DGUOKQ16854 277 aa16.14■□□□□ 0.18
CLN3-254ENST00000637050 C9orf135Q5VTT2 229 aa16.14■□□□□ 0.18
CLN3-254ENST00000637050 SLC16A14Q7RTX9 510 aa16.14■□□□□ 0.18
CLN3-254ENST00000637050 CEACAM19Q7Z692 300 aa16.14■□□□□ 0.18
CLN3-254ENST00000637050 ATF6BQ99941 703 aa16.14■□□□□ 0.18
CLN3-254ENST00000637050 MED18Q9BUE0 208 aa16.14■□□□□ 0.18
CLN3-254ENST00000637050 COMMD4Q9H0A8 199 aa16.14■□□□□ 0.18
CLN3-254ENST00000637050 OR52A1Q9UKL2 312 aa16.14■□□□□ 0.18
CLN3-254ENST00000637050 SLC22A13Q9Y226 551 aa16.14■□□□□ 0.18
CLN3-254ENST00000637050 SLC5A6Q9Y289 635 aa16.14■□□□□ 0.18
CLN3-254ENST00000637050 GATBO75879 557 aaKnown RBP16.14■□□□□ 0.17
CLN3-254ENST00000637050 TOXO94900 526 aa16.14■□□□□ 0.17
CLN3-254ENST00000637050 CNOT4O95628 575 aaKnown RBP16.14■□□□□ 0.17
CLN3-254ENST00000637050 IL1AP01583 271 aa16.14■□□□□ 0.17
CLN3-254ENST00000637050 CRHP06850 196 aa16.14■□□□□ 0.17
CLN3-254ENST00000637050 ITGA5P08648 1049 aa16.14■□□□□ 0.17
CLN3-254ENST00000637050 ZNF32P17041 273 aa16.14■□□□□ 0.17
CLN3-254ENST00000637050 HSD11B1P28845 292 aa16.14■□□□□ 0.17
CLN3-254ENST00000637050 SH3BGRP55822 239 aaPredicted RBP16.14■□□□□ 0.17
CLN3-254ENST00000637050 PSMA6P60900 246 aaKnown RBP16.14■□□□□ 0.17
CLN3-254ENST00000637050 FOXF2Q12947 444 aa16.14■□□□□ 0.17
CLN3-254ENST00000637050 RAB35Q15286 201 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms