RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 POLR1DQ9Y2S0 133 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 SPAARA0A1B0GVQ0 90 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 TVP23AA6NH52 213 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 OR4C45A6NMZ5 311 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 F5H0A9 414 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-214ENST00000637038 PSMD9O00233 223 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 HCRTR2O43614 444 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 CTAG2O75638 210 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 SPDEFO95238 335 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 UTS2O95399 124 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 RLN2P04090 185 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 CT62P0C5K7 136 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 ZNF20P17024 532 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 RAB3AP20336 220 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 TACR3P29371 465 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 GUCA1AP43080 201 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-214ENST00000637038 POLR2HP52434 150 aaKnown RBP3.59□□□□□ -1.83
SCN1A-214ENST00000637038 RPS11P62280 158 aaKnown RBP eCLIP3.59□□□□□ -1.83
SCN1A-214ENST00000637038 PSG6Q00889 435 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 MGAT2Q10469 447 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 EIF2B1Q14232 305 aaKnown RBP3.59□□□□□ -1.83
SCN1A-214ENST00000637038 ZNF345Q14585 488 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 SLC17A1Q14916 467 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 NKAPLQ5M9Q1 402 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 PXDC1Q5TGL8 231 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 EEF1A1P5Q5VTE0 462 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 FDX2Q6P4F2 183 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 Q6ZSR6 202 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 DPY19L4Q7Z388 723 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 GKN2Q86XP6 184 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 MISPQ8IVT2 679 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 SVBPQ8N300 66 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 BPIFB2Q8N4F0 458 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 BVESQ8NE79 360 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 OR51D1Q8NGF3 324 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 OTOSQ8NHW6 89 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 RPS4Y2Q8TD47 263 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 ARL11Q969Q4 196 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 GAL3ST4Q96RP7 486 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 TSPAN10Q9H1Z9 355 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-214ENST00000637038 LDAHQ9H6V9 325 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 PDE7BQ9NP56 450 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 PNO1Q9NRX1 252 aaKnown RBP3.59□□□□□ -1.83
SCN1A-214ENST00000637038 MLXQ9UH92 298 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 ING1Q9UK53 422 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-214ENST00000637038 COL27A1Q8IZC6 1860 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-214ENST00000637038 ZFHX4Q86UP3 3567 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 TRPM6Q9BX84 2022 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 CIB4A0PJX0 185 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 C5orf51A6NDU8 294 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 POM121BA6NF01 834 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 C17orf105B2RV13 164 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 H0YIG0 161 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 K7ENP7 123 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 PIN1P1O15428 100 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 MAGEB4O15481 346 aaPredicted RBP3.59□□□□□ -1.84
SCN1A-214ENST00000637038 BCL2L11O43521 198 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 SEMA4FO95754 770 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 H2BFMP0C1H6 154 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 TPT1P13693 172 aaKnown RBP3.59□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF250P15622 560 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 ALOX5APP20292 161 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 RAB6AP20340 208 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 CD96P40200 585 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 RPL27P61353 136 aaKnown RBP3.59□□□□□ -1.84
SCN1A-214ENST00000637038 RPL18Q07020 188 aaKnown RBP3.59□□□□□ -1.84
SCN1A-214ENST00000637038 PLCXD2Q0VAA5 305 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 MESP2Q0VG99 397 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 FHL1Q13642 323 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 SMCO1Q147U7 214 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 PPA1Q15181 289 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 ELOCQ15369 112 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 RGS7BPQ6MZT1 257 aaPredicted RBP3.59□□□□□ -1.84
SCN1A-214ENST00000637038 FAHD2BQ6P2I3 314 aaPredicted RBP3.59□□□□□ -1.84
SCN1A-214ENST00000637038 INO80CQ6PI98 192 aaPredicted RBP3.59□□□□□ -1.84
SCN1A-214ENST00000637038 ACOT7LQ6ZUV0 252 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 ATG4DQ86TL0 474 aaPredicted RBP3.59□□□□□ -1.84
SCN1A-214ENST00000637038 EIF4E3Q8N5X7 224 aaKnown RBP3.59□□□□□ -1.84
SCN1A-214ENST00000637038 ZDHHC22Q8N966 263 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 GATSQ8NAP1 163 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 OR5M9Q8NGP3 310 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 OR10K1Q8NGX5 313 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 C16orf52Q8NHV5 167 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 RNF128Q8TEB7 428 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 RELTQ969Z4 430 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 PTX4Q96A99 478 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 SLC25A36Q96CQ1 311 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 FAHD2AQ96GK7 314 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 SLC25A44Q96H78 314 aaPredicted RBP3.59□□□□□ -1.84
SCN1A-214ENST00000637038 TSNAXQ99598 290 aaKnown RBP3.59□□□□□ -1.84
SCN1A-214ENST00000637038 CMKLR1Q99788 373 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF416Q9BWM5 594 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF700Q9H0M5 742 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 POFUT1Q9H488 388 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 DTX4Q9Y2E6 619 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 ADAMTS9Q9P2N4 1935 aa3.59□□□□□ -1.84
SCN1A-214ENST00000637038 LNP1A1A4G5 178 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 FRG2CA6NGY1 282 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 B4DGG1 531 aa3.58□□□□□ -1.84
SCN1A-214ENST00000637038 NPIPB9F8W1W9 429 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms