RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 WDR12Q9GZL7 423 aaKnown RBP14.85□□□□□ -0.03
CLN3-252ENST00000636907 SLC24A3Q9HC58 644 aa14.85□□□□□ -0.03
CLN3-252ENST00000636907 PLSCR2Q9NRY7 297 aa14.85□□□□□ -0.03
CLN3-252ENST00000636907 OR52A1Q9UKL2 312 aa14.85□□□□□ -0.03
CLN3-252ENST00000636907 LAMA5O15230 3695 aa14.85□□□□□ -0.03
CLN3-252ENST00000636907 CEP295Q9C0D2 2601 aa14.85□□□□□ -0.03
CLN3-252ENST00000636907 TMEM269A0A1B0GVZ9 245 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 SLC22A20A6NK97 555 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 RRP8O43159 456 aaKnown RBP14.84□□□□□ -0.03
CLN3-252ENST00000636907 SOX2P48431 317 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 OR10A3P58181 314 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 FAM27BQ5VT28 67 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 KLHL24Q6TFL4 600 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 RHOUQ7L0Q8 258 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 BTLAQ7Z6A9 289 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 SYT9Q86SS6 491 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 GPR148Q8TDV2 347 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 AP3S1Q92572 193 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 BORCS5Q969J3 196 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 ATF6BQ99941 703 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 LINC00470Q9BZP3 86 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 FAM206AQ9NX38 181 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 ZNF175Q9Y473 711 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 A0A0G2JK05 382 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 NPR2P20594 1047 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 MMP16P51512 607 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 HIST1H3AP68431 136 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 TAF13Q15543 124 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 TBR1Q16650 682 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 HIST2H3PS2Q5TEC6 136 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 HIST2H3AQ71DI3 136 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 GJC3Q8NFK1 279 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 FBXO17Q96EF6 278 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 ABHD17AQ96GS6 310 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 FOXB1Q99853 325 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 SLC7A10Q9NS82 523 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 LHX6Q9UPM6 363 aa14.84□□□□□ -0.03
CLN3-252ENST00000636907 RGS5O15539 181 aa14.83□□□□□ -0.04
CLN3-252ENST00000636907 DOK2O60496 412 aa14.83□□□□□ -0.04
CLN3-252ENST00000636907 KRT33AO76009 404 aa14.83□□□□□ -0.04
CLN3-252ENST00000636907 B4GALT1P15291 398 aa14.83□□□□□ -0.04
CLN3-252ENST00000636907 SRMP19623 302 aa14.83□□□□□ -0.04
CLN3-252ENST00000636907 RAB3BP20337 219 aa14.83□□□□□ -0.04
CLN3-252ENST00000636907 MAPK3P27361 379 aaPredicted RBP14.83□□□□□ -0.04
CLN3-252ENST00000636907 HSD11B1P28845 292 aa14.83□□□□□ -0.04
CLN3-252ENST00000636907 NUFIP2Q7Z417 695 aaKnown RBP14.83□□□□□ -0.04
CLN3-252ENST00000636907 LAX1Q8IWV1 398 aa14.83□□□□□ -0.04
CLN3-252ENST00000636907 SH3GL3Q99963 347 aa14.83□□□□□ -0.04
CLN3-252ENST00000636907 SLC25A18Q9H1K4 315 aa14.83□□□□□ -0.04
CLN3-252ENST00000636907 BRD7Q9NPI1 651 aa14.83□□□□□ -0.04
CLN3-252ENST00000636907 B3GNT3Q9Y2A9 372 aa14.83□□□□□ -0.04
CLN3-252ENST00000636907 TRBV5-7A0A0A0MS05 114 aa14.82□□□□□ -0.04
CLN3-252ENST00000636907 CST2P09228 141 aa14.82□□□□□ -0.04
CLN3-252ENST00000636907 TNFSF8P32971 234 aa14.82□□□□□ -0.04
CLN3-252ENST00000636907 PRKXP51817 358 aa14.82□□□□□ -0.04
CLN3-252ENST00000636907 PSMA6P60900 246 aaKnown RBP14.82□□□□□ -0.04
CLN3-252ENST00000636907 PLEKHN1Q494U1 663 aaPredicted RBP14.82□□□□□ -0.04
CLN3-252ENST00000636907 CCDC92Q53HC0 331 aaPredicted RBP14.82□□□□□ -0.04
CLN3-252ENST00000636907 CEP78Q5JTW2 689 aa14.82□□□□□ -0.04
CLN3-252ENST00000636907 IDNKQ5T6J7 187 aa14.82□□□□□ -0.04
CLN3-252ENST00000636907 BCL2L15Q5TBC7 163 aa14.82□□□□□ -0.04
CLN3-252ENST00000636907 SFXN4Q6P4A7 337 aa14.82□□□□□ -0.04
CLN3-252ENST00000636907 ADGRE4PQ86SQ3 457 aa14.82□□□□□ -0.04
CLN3-252ENST00000636907 CCDC190Q86UF4 302 aa14.82□□□□□ -0.04
CLN3-252ENST00000636907 TSEN15Q8WW01 171 aaKnown RBP14.82□□□□□ -0.04
CLN3-252ENST00000636907 EXTL1Q92935 676 aa14.82□□□□□ -0.04
CLN3-252ENST00000636907 TMEM106AQ96A25 262 aa14.82□□□□□ -0.04
CLN3-252ENST00000636907 APH1AQ96BI3 265 aa14.82□□□□□ -0.04
CLN3-252ENST00000636907 SARAFQ96BY9 339 aa14.82□□□□□ -0.04
CLN3-252ENST00000636907 CEP19Q96LK0 163 aa14.82□□□□□ -0.04
CLN3-252ENST00000636907 MIXL1Q9H2W2 232 aa14.82□□□□□ -0.04
CLN3-252ENST00000636907 NIPAL2Q9H841 368 aa14.82□□□□□ -0.04
CLN3-252ENST00000636907 ABCB9Q9NP78 766 aa14.82□□□□□ -0.04
CLN3-252ENST00000636907 DDX28Q9NUL7 540 aaKnown RBP14.82□□□□□ -0.04
CLN3-252ENST00000636907 CLCF1Q9UBD9 225 aa14.82□□□□□ -0.04
CLN3-252ENST00000636907 AK6Q9Y3D8 172 aaKnown RBP14.82□□□□□ -0.04
CLN3-252ENST00000636907 CMAHPQ9Y471 501 aa14.82□□□□□ -0.04
CLN3-252ENST00000636907 TAF4O00268 1085 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 FCGR2AP12318 317 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 CFL1P23528 166 aaKnown RBP14.81□□□□□ -0.04
CLN3-252ENST00000636907 AGTR1P30556 359 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 ETV6P41212 452 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 GRB2P62993 217 aaKnown RBP14.81□□□□□ -0.04
CLN3-252ENST00000636907 SLC25A35Q3KQZ1 300 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 RPUSD3Q6P087 351 aaKnown RBP14.81□□□□□ -0.04
CLN3-252ENST00000636907 P4HA3Q7Z4N8 544 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 SLC22A24Q8N4F4 322 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 OR5M9Q8NGP3 310 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 PBOV1Q9GZY1 135 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 LUZP4Q9P127 313 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 COMMD3Q9UBI1 195 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 SLC5A6Q9Y289 635 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 TP53TG5Q9Y2B4 290 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 RAXQ9Y2V3 346 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 NCOA6Q14686 2063 aaPredicted RBP14.81□□□□□ -0.04
CLN3-252ENST00000636907 ACACAQ13085 2346 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 LOC107986453A0A1B0GWG9 222 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 ANKRD61A6NGH8 418 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 OR6C65A6NJZ3 312 aa14.81□□□□□ -0.04
CLN3-252ENST00000636907 RPL36A-HNRNPH2H7BZ11 118 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms