RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 SLC16A7O60669 478 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 SASH3O75995 380 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 GPANK1O95872 356 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 CD14P08571 375 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 PPIAL4FP0DN26 164 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 TROVE2P10155 538 aaKnown RBP eCLIP13.58□□□□□ -0.24
CLN3-246ENST00000636228 COX5BP10606 129 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 ZNF12P17014 697 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 TNFRSF1AP19438 455 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 LIPEQ05469 1076 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 SCRN3Q0VDG4 424 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 DBPQ10586 325 aaPredicted RBP13.58□□□□□ -0.24
CLN3-246ENST00000636228 HLXQ14774 488 aaPredicted RBP13.58□□□□□ -0.24
CLN3-246ENST00000636228 ZBED5Q49AG3 693 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 RBMS3Q6XE24 437 aaKnown RBP13.58□□□□□ -0.24
CLN3-246ENST00000636228 MBOAT2Q6ZWT7 520 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 SPICQ8N5J4 248 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 ATG16L2Q8NAA4 619 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 NPEPL1Q8NDH3 523 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 ZNF420Q8TAQ5 688 aaPredicted RBP13.58□□□□□ -0.24
CLN3-246ENST00000636228 ACOT11Q8WXI4 607 aaPredicted RBP13.58□□□□□ -0.24
CLN3-246ENST00000636228 POP5Q969H6 163 aaKnown RBP13.58□□□□□ -0.24
CLN3-246ENST00000636228 C1orf147Q96MC9 270 aaPredicted RBP13.58□□□□□ -0.24
CLN3-246ENST00000636228 ZNF48Q96MX3 618 aaPredicted RBP13.58□□□□□ -0.24
CLN3-246ENST00000636228 ZNF570Q96NI8 536 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 PLEK2Q9NYT0 353 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 PTTG3PQ9NZH4 202 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 ASH2LQ9UBL3 628 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 IL20RAQ9UHF4 553 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 COA3Q9Y2R0 106 aaPredicted RBP13.58□□□□□ -0.24
CLN3-246ENST00000636228 INSIG2Q9Y5U4 225 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 DYSFO75923 2080 aa13.57□□□□□ -0.24
CLN3-246ENST00000636228 DNAJC9-AS1A6NH13 148 aa13.57□□□□□ -0.24
CLN3-246ENST00000636228 H0YL77 283 aa13.57□□□□□ -0.24
CLN3-246ENST00000636228 CXCR6O00574 342 aa13.57□□□□□ -0.24
CLN3-246ENST00000636228 XKRYO14609 159 aa13.57□□□□□ -0.24
CLN3-246ENST00000636228 HKR1P10072 659 aa13.57□□□□□ -0.24
CLN3-246ENST00000636228 BAMBIQ13145 260 aa13.57□□□□□ -0.24
CLN3-246ENST00000636228 ANKDD1AQ495B1 522 aa13.57□□□□□ -0.24
CLN3-246ENST00000636228 TMEM155Q4W5P6 130 aa13.57□□□□□ -0.24
CLN3-246ENST00000636228 IFI44LQ53G44 452 aa13.57□□□□□ -0.24
CLN3-246ENST00000636228 CCDC92Q53HC0 331 aaPredicted RBP13.57□□□□□ -0.24
CLN3-246ENST00000636228 OR2T2Q6IF00 324 aa13.57□□□□□ -0.24
CLN3-246ENST00000636228 TMPRSS11FQ6ZWK6 438 aa13.57□□□□□ -0.24
CLN3-246ENST00000636228 FKBP9P1Q75LS8 142 aa13.57□□□□□ -0.24
CLN3-246ENST00000636228 FAM122BQ7Z309 247 aa13.57□□□□□ -0.24
CLN3-246ENST00000636228 TSEN54Q7Z6J9 526 aaKnown RBP13.57□□□□□ -0.24
CLN3-246ENST00000636228 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.57□□□□□ -0.24
CLN3-246ENST00000636228 SLC15A3Q8IY34 581 aa13.57□□□□□ -0.24
CLN3-246ENST00000636228 RNF113BQ8IZP6 322 aaKnown RBP13.57□□□□□ -0.24
CLN3-246ENST00000636228 OR10AD1Q8NGE0 317 aa13.57□□□□□ -0.24
CLN3-246ENST00000636228 PTP4A1Q93096 173 aa13.57□□□□□ -0.24
CLN3-246ENST00000636228 FAM46AQ96IP4 442 aaKnown RBP13.57□□□□□ -0.24
CLN3-246ENST00000636228 HSH2DQ96JZ2 352 aa13.57□□□□□ -0.24
CLN3-246ENST00000636228 ZNF747Q9BV97 191 aa13.57□□□□□ -0.24
CLN3-246ENST00000636228 VIPAS39Q9H9C1 493 aa13.57□□□□□ -0.24
CLN3-246ENST00000636228 IL19Q9UHD0 177 aa13.57□□□□□ -0.24
CLN3-246ENST00000636228 CEACAM18A8MTB9 384 aa13.56□□□□□ -0.24
CLN3-246ENST00000636228 F5H0A9 414 aaPredicted RBP13.56□□□□□ -0.24
CLN3-246ENST00000636228 TMEM178BH3BS89 294 aa13.56□□□□□ -0.24
CLN3-246ENST00000636228 GSTA4O15217 222 aa13.56□□□□□ -0.24
CLN3-246ENST00000636228 RER1O15258 196 aa13.56□□□□□ -0.24
CLN3-246ENST00000636228 TMPRSS2O15393 492 aa13.56□□□□□ -0.24
CLN3-246ENST00000636228 CYB5R3P00387 301 aaPredicted RBP13.56□□□□□ -0.24
CLN3-246ENST00000636228 SERPINA1P01009 418 aa13.56□□□□□ -0.24
CLN3-246ENST00000636228 PRTN3P24158 256 aa13.56□□□□□ -0.24
CLN3-246ENST00000636228 CD80P33681 288 aa13.56□□□□□ -0.24
CLN3-246ENST00000636228 MMP16P51512 607 aa13.56□□□□□ -0.24
CLN3-246ENST00000636228 FOXL1Q12952 345 aa13.56□□□□□ -0.24
CLN3-246ENST00000636228 AQP6Q13520 282 aa13.56□□□□□ -0.24
CLN3-246ENST00000636228 TUSC1Q2TAM9 212 aa13.56□□□□□ -0.24
CLN3-246ENST00000636228 CBLL1Q75N03 491 aa13.56□□□□□ -0.24
CLN3-246ENST00000636228 DOK3Q7L591 496 aa13.56□□□□□ -0.24
CLN3-246ENST00000636228 RRM2BQ7LG56 351 aa13.56□□□□□ -0.24
CLN3-246ENST00000636228 OR1F12Q8NHA8 337 aa13.56□□□□□ -0.24
CLN3-246ENST00000636228 WACQ9BTA9 647 aa13.56□□□□□ -0.24
CLN3-246ENST00000636228 MRI1Q9BV20 369 aa13.56□□□□□ -0.24
CLN3-246ENST00000636228 SYT4Q9H2B2 425 aa13.56□□□□□ -0.24
CLN3-246ENST00000636228 NMNAT1Q9HAN9 279 aaPredicted RBP13.56□□□□□ -0.24
CLN3-246ENST00000636228 GCM1Q9NP62 436 aa13.56□□□□□ -0.24
CLN3-246ENST00000636228 POLR3KQ9Y2Y1 108 aaPredicted RBP13.56□□□□□ -0.24
CLN3-246ENST00000636228 CAPN7Q9Y6W3 813 aa13.56□□□□□ -0.24
CLN3-246ENST00000636228 OR6C6A6NF89 314 aa13.55□□□□□ -0.24
CLN3-246ENST00000636228 NME4O00746 187 aa13.55□□□□□ -0.24
CLN3-246ENST00000636228 SOCS2O14508 198 aa13.55□□□□□ -0.24
CLN3-246ENST00000636228 PTP4A3O75365 173 aa13.55□□□□□ -0.24
CLN3-246ENST00000636228 KHDRBS3O75525 346 aaKnown RBP13.55□□□□□ -0.24
CLN3-246ENST00000636228 IGHV4-38-2P0DP08 117 aa13.55□□□□□ -0.24
CLN3-246ENST00000636228 NCK1P16333 377 aa13.55□□□□□ -0.24
CLN3-246ENST00000636228 MDH2P40926 338 aaKnown RBP13.55□□□□□ -0.24
CLN3-246ENST00000636228 CENPAP49450 140 aa13.55□□□□□ -0.24
CLN3-246ENST00000636228 SLC7A2P52569 658 aa13.55□□□□□ -0.24
CLN3-246ENST00000636228 PRSS12P56730 875 aa13.55□□□□□ -0.24
CLN3-246ENST00000636228 GUCY1A3Q02108 690 aa13.55□□□□□ -0.24
CLN3-246ENST00000636228 KRR1Q13601 381 aaKnown RBP13.55□□□□□ -0.24
CLN3-246ENST00000636228 MEP1BQ16820 701 aa13.55□□□□□ -0.24
CLN3-246ENST00000636228 ESCO2Q56NI9 601 aa13.55□□□□□ -0.24
CLN3-246ENST00000636228 PTCHD4Q6ZW05 846 aa13.55□□□□□ -0.24
CLN3-246ENST00000636228 SLC7A13Q8TCU3 470 aa13.55□□□□□ -0.24
CLN3-246ENST00000636228 TSSK2Q96PF2 358 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms