RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 ZNF250P15622 560 aa17.8■□□□□ 0.44
CLN3-240ENST00000631023 SPI1P17947 270 aa17.8■□□□□ 0.44
CLN3-240ENST00000631023 CRISP1P54107 249 aa17.8■□□□□ 0.44
CLN3-240ENST00000631023 DBPQ10586 325 aaPredicted RBP17.8■□□□□ 0.44
CLN3-240ENST00000631023 MSMPQ1L6U9 139 aa17.8■□□□□ 0.44
CLN3-240ENST00000631023 CORO6Q6QEF8 472 aa17.8■□□□□ 0.44
CLN3-240ENST00000631023 OR51L1Q8NGJ5 315 aa17.8■□□□□ 0.44
CLN3-240ENST00000631023 HDHD2Q9H0R4 259 aa17.8■□□□□ 0.44
CLN3-240ENST00000631023 GABARAPL1Q9H0R8 117 aa17.8■□□□□ 0.44
CLN3-240ENST00000631023 SLC25A19Q9HC21 320 aa17.8■□□□□ 0.44
CLN3-240ENST00000631023 MRPL22Q9NWU5 206 aaKnown RBP17.8■□□□□ 0.44
CLN3-240ENST00000631023 CYB5R1Q9UHQ9 305 aa17.8■□□□□ 0.44
CLN3-240ENST00000631023 FZR1Q9UM11 496 aa17.8■□□□□ 0.44
CLN3-240ENST00000631023 OR6C6A6NF89 314 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 M0R233 179 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 ABHD16AO95870 558 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 F12P00748 615 aaPredicted RBP17.79■□□□□ 0.44
CLN3-240ENST00000631023 GYPBP06028 91 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 FOSL1P15407 271 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 GGT2P36268 569 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 WNT5AP41221 380 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 KLF3P57682 345 aaPredicted RBP17.79■□□□□ 0.44
CLN3-240ENST00000631023 MOGQ16653 247 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 ELFN2Q5R3F8 820 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 ZNF101Q8IZC7 436 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 OR6K6Q8NGW6 343 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 ABHD4Q8TB40 342 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 OSBPL10Q9BXB5 764 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 MS4A5Q9H3V2 200 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 TBCCD1Q9NVR7 557 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 ZNF469Q96JG9 3925 aaPredicted RBP17.79■□□□□ 0.44
CLN3-240ENST00000631023 A0A1W2PPW3 197 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 PRR23D1E9PI22 279 aaPredicted RBP17.79■□□□□ 0.44
CLN3-240ENST00000631023 SURF4O15260 269 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 PRR23D2P0DMB1 279 aaPredicted RBP17.79■□□□□ 0.44
CLN3-240ENST00000631023 GCH1P30793 250 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 DSCR9P59020 149 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 PPP1CBP62140 327 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 ECH1Q13011 328 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 ZNF718Q3SXZ3 478 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 KDM4DQ6B0I6 523 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 SLC18B1Q6NT16 456 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 LRP11Q86VZ4 500 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 LINC00346Q8IVM7 164 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 IPCEF1Q8WWN9 437 aaPredicted RBP17.79■□□□□ 0.44
CLN3-240ENST00000631023 DCLRE1CQ96SD1 692 aaKnown RBP17.79■□□□□ 0.44
CLN3-240ENST00000631023 PITX2Q99697 317 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 COQ7Q99807 217 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 PRRG3Q9BZD7 231 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 SLCO1C1Q9NYB5 712 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 OAZ3Q9UMX2 235 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 GRIP1Q9Y3R0 1128 aa17.79■□□□□ 0.44
CLN3-240ENST00000631023 TVP23AA6NH52 213 aa17.78■□□□□ 0.44
CLN3-240ENST00000631023 FAM183AA6NL82 134 aa17.78■□□□□ 0.44
CLN3-240ENST00000631023 ADRA2AP08913 450 aa17.78■□□□□ 0.44
CLN3-240ENST00000631023 CLUP10909 449 aa17.78■□□□□ 0.44
CLN3-240ENST00000631023 TUBG1P23258 451 aa17.78■□□□□ 0.44
CLN3-240ENST00000631023 ERVS71-1P61550 626 aa17.78■□□□□ 0.44
CLN3-240ENST00000631023 TMEM236Q5W0B7 351 aa17.78■□□□□ 0.44
CLN3-240ENST00000631023 CLEC2AQ6UVW9 174 aa17.78■□□□□ 0.44
CLN3-240ENST00000631023 ZNRF4Q8WWF5 429 aa17.78■□□□□ 0.44
CLN3-240ENST00000631023 NEU4Q8WWR8 484 aaPredicted RBP17.78■□□□□ 0.44
CLN3-240ENST00000631023 PTP4A1Q93096 173 aa17.78■□□□□ 0.44
CLN3-240ENST00000631023 COG8Q96MW5 612 aa17.78■□□□□ 0.44
CLN3-240ENST00000631023 SORCS2Q96PQ0 1159 aa17.78■□□□□ 0.44
CLN3-240ENST00000631023 RHNO1Q9BSD3 238 aa17.78■□□□□ 0.44
CLN3-240ENST00000631023 TUBG2Q9NRH3 451 aa17.78■□□□□ 0.44
CLN3-240ENST00000631023 IGLV3-9A0A075B6K5 115 aa17.77■□□□□ 0.44
CLN3-240ENST00000631023 H3BSA7 217 aa17.77■□□□□ 0.44
CLN3-240ENST00000631023 NGFP01138 241 aa17.77■□□□□ 0.44
CLN3-240ENST00000631023 ENTPD1P49961 510 aa17.77■□□□□ 0.44
CLN3-240ENST00000631023 PTGES3Q15185 160 aaKnown RBP17.77■□□□□ 0.44
CLN3-240ENST00000631023 SNAPC1Q16533 368 aa17.77■□□□□ 0.44
CLN3-240ENST00000631023 NKPD1Q17RQ9 610 aa17.77■□□□□ 0.44
CLN3-240ENST00000631023 TMEM154Q6P9G4 183 aa17.77■□□□□ 0.44
CLN3-240ENST00000631023 CFAP77Q6ZQR2 320 aa17.77■□□□□ 0.44
CLN3-240ENST00000631023 ZNF511Q8NB15 262 aa17.77■□□□□ 0.44
CLN3-240ENST00000631023 MARS2Q96GW9 593 aaKnown RBP17.77■□□□□ 0.44
CLN3-240ENST00000631023 MED20Q9H944 212 aa17.77■□□□□ 0.44
CLN3-240ENST00000631023 COMMD3-BMI1R4GMX3 469 aa17.77■□□□□ 0.44
CLN3-240ENST00000631023 TRIM64A6NGJ6 449 aa17.76■□□□□ 0.43
CLN3-240ENST00000631023 TRIM64BA6NI03 449 aa17.76■□□□□ 0.43
CLN3-240ENST00000631023 H3BNX3 289 aa17.76■□□□□ 0.43
CLN3-240ENST00000631023 GLCEO94923 617 aa17.76■□□□□ 0.43
CLN3-240ENST00000631023 CLPTM1O96005 669 aa17.76■□□□□ 0.43
CLN3-240ENST00000631023 CSF3P09919 207 aa17.76■□□□□ 0.43
CLN3-240ENST00000631023 IGFBP5P24593 272 aa17.76■□□□□ 0.43
CLN3-240ENST00000631023 RGS6P49758 472 aa17.76■□□□□ 0.43
CLN3-240ENST00000631023 TNK1Q13470 666 aa17.76■□□□□ 0.43
CLN3-240ENST00000631023 SPATA46Q5T0L3 261 aa17.76■□□□□ 0.43
CLN3-240ENST00000631023 PLBD1Q6P4A8 553 aa17.76■□□□□ 0.43
CLN3-240ENST00000631023 RFPL4BQ6ZWI9 263 aa17.76■□□□□ 0.43
CLN3-240ENST00000631023 SLC25A40Q8TBP6 338 aa17.76■□□□□ 0.43
CLN3-240ENST00000631023 SNX33Q8WV41 574 aa17.76■□□□□ 0.43
CLN3-240ENST00000631023 SLC7A6Q92536 515 aa17.76■□□□□ 0.43
CLN3-240ENST00000631023 C18orf12Q96KH6 178 aa17.76■□□□□ 0.43
CLN3-240ENST00000631023 ATF6BQ99941 703 aa17.76■□□□□ 0.43
CLN3-240ENST00000631023 PKP2Q99959 881 aa17.76■□□□□ 0.43
CLN3-240ENST00000631023 RBM4BQ9BQ04 359 aaKnown RBP17.76■□□□□ 0.43
CLN3-240ENST00000631023 HCAR1Q9BXC0 346 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms