RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 VSTM5A8MXK1 200 aa17.5■□□□□ 0.39
PTCD3-220ENST00000627371 M0R129 80 aa17.5■□□□□ 0.39
PTCD3-220ENST00000627371 OVOL3O00110 214 aa17.5■□□□□ 0.39
PTCD3-220ENST00000627371 GPRIN2O60269 458 aa17.5■□□□□ 0.39
PTCD3-220ENST00000627371 ICMTO60725 284 aa17.5■□□□□ 0.39
PTCD3-220ENST00000627371 OR4A8P0C604 315 aa17.5■□□□□ 0.39
PTCD3-220ENST00000627371 FAM157BP0CG42 384 aa17.5■□□□□ 0.39
PTCD3-220ENST00000627371 PSKH1P11801 424 aa17.5■□□□□ 0.39
PTCD3-220ENST00000627371 GSTT1P30711 240 aa17.5■□□□□ 0.39
PTCD3-220ENST00000627371 SERPINF1P36955 418 aa17.5■□□□□ 0.39
PTCD3-220ENST00000627371 RPS27P42677 84 aaKnown RBP17.5■□□□□ 0.39
PTCD3-220ENST00000627371 TRIP10Q15642 601 aa17.5■□□□□ 0.39
PTCD3-220ENST00000627371 KLHL12Q53G59 568 aa17.5■□□□□ 0.39
PTCD3-220ENST00000627371 TEX30Q5JUR7 227 aa17.5■□□□□ 0.39
PTCD3-220ENST00000627371 ELFN2Q5R3F8 820 aa17.5■□□□□ 0.39
PTCD3-220ENST00000627371 TCEANCQ8N8B7 351 aa17.5■□□□□ 0.39
PTCD3-220ENST00000627371 TMEM163Q8TC26 289 aa17.5■□□□□ 0.39
PTCD3-220ENST00000627371 INTS14Q96SY0 518 aa17.5■□□□□ 0.39
PTCD3-220ENST00000627371 COQ7Q99807 217 aa17.5■□□□□ 0.39
PTCD3-220ENST00000627371 FOXC2Q99958 501 aa17.5■□□□□ 0.39
PTCD3-220ENST00000627371 CREBBPQ92793 2442 aa17.5■□□□□ 0.39
PTCD3-220ENST00000627371 E9PQ18 207 aa17.49■□□□□ 0.39
PTCD3-220ENST00000627371 ZNF593O00488 134 aaPredicted RBP17.49■□□□□ 0.39
PTCD3-220ENST00000627371 TLX2O43763 284 aaPredicted RBP17.49■□□□□ 0.39
PTCD3-220ENST00000627371 SMPD2O60906 423 aa17.49■□□□□ 0.39
PTCD3-220ENST00000627371 SPARCP09486 303 aa17.49■□□□□ 0.39
PTCD3-220ENST00000627371 WNT5AP41221 380 aa17.49■□□□□ 0.39
PTCD3-220ENST00000627371 RAD52P43351 418 aa17.49■□□□□ 0.39
PTCD3-220ENST00000627371 UCP2P55851 309 aa17.49■□□□□ 0.39
PTCD3-220ENST00000627371 EFNB3Q15768 340 aa17.49■□□□□ 0.39
PTCD3-220ENST00000627371 ZIK1Q3SY52 487 aaPredicted RBP17.49■□□□□ 0.39
PTCD3-220ENST00000627371 ERI1Q8IV48 349 aaKnown RBP17.49■□□□□ 0.39
PTCD3-220ENST00000627371 TIGD4Q8IY51 512 aa17.49■□□□□ 0.39
PTCD3-220ENST00000627371 ZMYND19Q96E35 227 aaPredicted RBP17.49■□□□□ 0.39
PTCD3-220ENST00000627371 MAP6Q96JE9 813 aa17.49■□□□□ 0.39
PTCD3-220ENST00000627371 HRASLS5Q96KN8 279 aa17.49■□□□□ 0.39
PTCD3-220ENST00000627371 BCL2L14Q9BZR8 327 aa17.49■□□□□ 0.39
PTCD3-220ENST00000627371 TOR3AQ9H497 397 aa17.49■□□□□ 0.39
PTCD3-220ENST00000627371 DCLRE1BQ9H816 532 aa17.49■□□□□ 0.39
PTCD3-220ENST00000627371 PNRC2Q9NPJ4 139 aaKnown RBP17.49■□□□□ 0.39
PTCD3-220ENST00000627371 EIF3KQ9UBQ5 218 aaKnown RBP17.49■□□□□ 0.39
PTCD3-220ENST00000627371 CMAHPQ9Y471 501 aa17.49■□□□□ 0.39
PTCD3-220ENST00000627371 B9A039 149 aa17.48■□□□□ 0.39
PTCD3-220ENST00000627371 PAX1P15863 534 aa17.48■□□□□ 0.39
PTCD3-220ENST00000627371 RPS7P62081 194 aaKnown RBP17.48■□□□□ 0.39
PTCD3-220ENST00000627371 APOFQ13790 326 aa17.48■□□□□ 0.39
PTCD3-220ENST00000627371 MSMPQ1L6U9 139 aa17.48■□□□□ 0.39
PTCD3-220ENST00000627371 SWI5Q1ZZU3 235 aa17.48■□□□□ 0.39
PTCD3-220ENST00000627371 MST1LQ2TV78 715 aa17.48■□□□□ 0.39
PTCD3-220ENST00000627371 NXNL2Q5VZ03 156 aa17.48■□□□□ 0.39
PTCD3-220ENST00000627371 UNQ6126/PRO20091Q6UXV3 157 aa17.48■□□□□ 0.39
PTCD3-220ENST00000627371 ZNF101Q8IZC7 436 aa17.48■□□□□ 0.39
PTCD3-220ENST00000627371 OR6N2Q8NGY6 317 aa17.48■□□□□ 0.39
PTCD3-220ENST00000627371 SLC7A6Q92536 515 aa17.48■□□□□ 0.39
PTCD3-220ENST00000627371 MRPL24Q96A35 216 aaKnown RBP17.48■□□□□ 0.39
PTCD3-220ENST00000627371 C4orf45Q96LM5 186 aa17.48■□□□□ 0.39
PTCD3-220ENST00000627371 MBOAT4Q96T53 435 aa17.48■□□□□ 0.39
PTCD3-220ENST00000627371 PITX2Q99697 317 aa17.48■□□□□ 0.39
PTCD3-220ENST00000627371 ATF6BQ99941 703 aa17.48■□□□□ 0.39
PTCD3-220ENST00000627371 OR51B6Q9H340 312 aa17.48■□□□□ 0.39
PTCD3-220ENST00000627371 C8orf4Q9NR00 106 aa17.48■□□□□ 0.39
PTCD3-220ENST00000627371 ZNF701Q9NV72 531 aaPredicted RBP17.48■□□□□ 0.39
PTCD3-220ENST00000627371 OTOGQ6ZRI0 2925 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 CCDC182A6NF36 153 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 ABHD16AO95870 558 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 PEX2P28328 305 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 ART1P52961 327 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 CDC42P60953 191 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 ECH1Q13011 328 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 KRTAP27-1Q3LI81 207 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 LCN1P1Q5VSP4 162 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 AADACL4Q5VUY2 407 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 RGS7BPQ6MZT1 257 aaPredicted RBP17.47■□□□□ 0.39
PTCD3-220ENST00000627371 TMEM154Q6P9G4 183 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 ARL9Q6T311 187 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 RFPL4BQ6ZWI9 263 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 DCXRQ7Z4W1 244 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 C1orf174Q8IYL3 243 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 LRRC75A-AS1Q8N1F1 130 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 OR10S1Q8NGN2 331 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 OR8J1Q8NGP2 316 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 RDH12Q96NR8 316 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 IL4I1Q96RQ9 567 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 DCLRE1CQ96SD1 692 aaKnown RBP17.47■□□□□ 0.39
PTCD3-220ENST00000627371 GSX2Q9BZM3 304 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 CXXC4Q9H2H0 198 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 PLK3Q9H4B4 646 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 ELOVL3Q9HB03 270 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 ITGB1BP2Q9UKP3 347 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 VPS13CQ709C8 3753 aa17.47■□□□□ 0.39
PTCD3-220ENST00000627371 LCKP06239 509 aa17.46■□□□□ 0.39
PTCD3-220ENST00000627371 DBHP09172 617 aa17.46■□□□□ 0.39
PTCD3-220ENST00000627371 BMP4P12644 408 aa17.46■□□□□ 0.39
PTCD3-220ENST00000627371 CDKN1AP38936 164 aa17.46■□□□□ 0.39
PTCD3-220ENST00000627371 PTH2RP49190 550 aa17.46■□□□□ 0.39
PTCD3-220ENST00000627371 ERVS71-1P61550 626 aa17.46■□□□□ 0.39
PTCD3-220ENST00000627371 SNRPD2P62316 118 aaKnown RBP17.46■□□□□ 0.39
PTCD3-220ENST00000627371 LPCAT4Q643R3 524 aa17.46■□□□□ 0.39
PTCD3-220ENST00000627371 SHFQ7M4L6 423 aa17.46■□□□□ 0.39
PTCD3-220ENST00000627371 DPY19L4Q7Z388 723 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms