RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 EPGNQ6UW88 154 aa12.24□□□□□ -0.45
PNKP-218ENST00000625299 IGFN1Q86VF2 1251 aa12.24□□□□□ -0.45
PNKP-218ENST00000625299 MOGAT3Q86VF5 341 aa12.24□□□□□ -0.45
PNKP-218ENST00000625299 SLC30A8Q8IWU4 369 aa12.24□□□□□ -0.45
PNKP-218ENST00000625299 MREGQ8N565 214 aa12.24□□□□□ -0.45
PNKP-218ENST00000625299 TMEM86BQ8N661 226 aa12.24□□□□□ -0.45
PNKP-218ENST00000625299 FITM2Q8N6M3 262 aa12.24□□□□□ -0.45
PNKP-218ENST00000625299 TAMM41Q96BW9 452 aa12.24□□□□□ -0.45
PNKP-218ENST00000625299 FAM71F1Q96KD3 344 aaPredicted RBP12.24□□□□□ -0.45
PNKP-218ENST00000625299 MEGF10Q96KG7 1140 aa12.24□□□□□ -0.45
PNKP-218ENST00000625299 ALG12Q9BV10 488 aa12.24□□□□□ -0.45
PNKP-218ENST00000625299 CDADC1Q9BWV3 514 aa12.24□□□□□ -0.45
PNKP-218ENST00000625299 EMC7Q9NPA0 242 aa12.24□□□□□ -0.45
PNKP-218ENST00000625299 KIF17Q9P2E2 1029 aa12.24□□□□□ -0.45
PNKP-218ENST00000625299 GMEB1Q9Y692 573 aa12.24□□□□□ -0.45
PNKP-218ENST00000625299 C12orf71A8MTZ7 269 aa12.23□□□□□ -0.45
PNKP-218ENST00000625299 IFNL4K9M1U5 179 aa12.23□□□□□ -0.45
PNKP-218ENST00000625299 SFTPBP07988 381 aa12.23□□□□□ -0.45
PNKP-218ENST00000625299 CPT2P23786 658 aa12.23□□□□□ -0.45
PNKP-218ENST00000625299 SELPLGQ14242 412 aa12.23□□□□□ -0.45
PNKP-218ENST00000625299 ZNF404Q494X3 552 aa12.23□□□□□ -0.45
PNKP-218ENST00000625299 FBLN7Q53RD9 439 aa12.23□□□□□ -0.45
PNKP-218ENST00000625299 LINC01006Q8NI28 216 aa12.23□□□□□ -0.45
PNKP-218ENST00000625299 TMEM239Q8WW34 195 aa12.23□□□□□ -0.45
PNKP-218ENST00000625299 SSMEM1Q8WWF3 244 aa12.23□□□□□ -0.45
PNKP-218ENST00000625299 SLC7A6Q92536 515 aa12.23□□□□□ -0.45
PNKP-218ENST00000625299 HAVCR1Q96D42 359 aa12.23□□□□□ -0.45
PNKP-218ENST00000625299 MAGEB18Q96M61 343 aa12.23□□□□□ -0.45
PNKP-218ENST00000625299 PCDHAC1Q9H158 963 aa12.23□□□□□ -0.45
PNKP-218ENST00000625299 PTTG3PQ9NZH4 202 aa12.23□□□□□ -0.45
PNKP-218ENST00000625299 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.23□□□□□ -0.45
PNKP-218ENST00000625299 POMT1Q9Y6A1 747 aa12.23□□□□□ -0.45
PNKP-218ENST00000625299 V9GYY5 206 aaPredicted RBP12.23□□□□□ -0.45
PNKP-218ENST00000625299 LRRC30A6NM36 301 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 C22orf46C9J442 243 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 H0YL77 283 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 H7C1C5 153 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 ENSAO43768 121 aaKnown RBP12.22□□□□□ -0.45
PNKP-218ENST00000625299 PIP5K1CO60331 668 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 GPR137BO60478 399 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 SHOX2O60902 331 aaPredicted RBP12.22□□□□□ -0.45
PNKP-218ENST00000625299 SCG5P05408 212 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 TNFRSF1BP20333 461 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 TUBG1P23258 451 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 RBM34P42696 430 aaKnown RBP12.22□□□□□ -0.45
PNKP-218ENST00000625299 MRPL19P49406 292 aaKnown RBP12.22□□□□□ -0.45
PNKP-218ENST00000625299 SRP9P49458 86 aaKnown RBP12.22□□□□□ -0.45
PNKP-218ENST00000625299 BPIFB3P59826 476 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 RPL27P61353 136 aaKnown RBP12.22□□□□□ -0.45
PNKP-218ENST00000625299 LCN6P62502 163 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 SCRN3Q0VDG4 424 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 WDR25Q64LD2 544 aaPredicted RBP12.22□□□□□ -0.45
PNKP-218ENST00000625299 OR2T2Q6IF00 324 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 LYPD2Q6UXB3 125 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 DLEU7Q6UYE1 221 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 DHDDSQ86SQ9 333 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 PATL1Q86TB9 770 aaKnown RBP12.22□□□□□ -0.45
PNKP-218ENST00000625299 C19orf18Q8NEA5 215 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 TBC1D15Q8TC07 691 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 DYRK2Q92630 601 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 PTP4A1Q93096 173 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 TECTBQ96PL2 329 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 POLE4Q9NR33 117 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 TUBG2Q9NRH3 451 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 SH3GLB1Q9Y371 365 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 MED31Q9Y3C7 131 aa12.22□□□□□ -0.45
PNKP-218ENST00000625299 NPIPB13A6NJU9 1138 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 NPIPB4C9JG80 1138 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 C3orf80F5H4A9 247 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 F5H5P2 479 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 PHYHO14832 338 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 SGCEO43556 437 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 CLPXO76031 633 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 TOX4O94842 621 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 IGHV4-59P01825 116 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 PRB2P02812 416 aaPredicted RBP12.21□□□□□ -0.45
PNKP-218ENST00000625299 COX5BP10606 129 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 IRF2P14316 349 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 CFHR2P36980 270 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 PROK1P58294 105 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 CTXN1P60606 82 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 C2orf68Q2NKX9 166 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 OTPQ5XKR4 325 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 FOXL2NBQ6ZUU3 175 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 VASH1Q7L8A9 365 aaPredicted RBP12.21□□□□□ -0.45
PNKP-218ENST00000625299 SYT9Q86SS6 491 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 MICU2Q8IYU8 434 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 C1orf87Q8N0U7 546 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 BHLHE23Q8NDY6 225 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 FNDC8Q8TC99 324 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 GATAD2BQ8WXI9 593 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 COG8Q96MW5 612 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 EBF4Q9BQW3 602 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 MMADHCQ9H3L0 296 aaPredicted RBP12.21□□□□□ -0.45
PNKP-218ENST00000625299 NKIRAS1Q9NYS0 192 aa12.21□□□□□ -0.45
PNKP-218ENST00000625299 CENPVL3A0A0U1RRI6 287 aa12.2□□□□□ -0.46
PNKP-218ENST00000625299 G3V4G9 280 aa12.2□□□□□ -0.46
PNKP-218ENST00000625299 P2RY10O00398 339 aa12.2□□□□□ -0.46
PNKP-218ENST00000625299 TNFRSF13BO14836 293 aaPredicted RBP12.2□□□□□ -0.46
PNKP-218ENST00000625299 TSPAN19P0C672 248 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 270.3 ms